PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5501-5550 / 86044 show all
ciseli-customSNPtvHG002complexvar*
94.9824
96.7736
93.2564
24.4003
2382137942236085170722875
16.8404
ciseli-customSNPtvHG002complexvarhet
94.7007
95.5637
93.8531
24.0959
14404766871433239387273
2.9083
ciseli-customSNPtvHG002complexvarhetalt
70.4724
57.7419
90.4040
39.8176
179131179199
47.3684
ciseli-customSNPtvHG002complexvarhomalt
95.4763
98.8182
92.3530
24.8215
9398711249258376662593
33.8247
ckim-dragenINDEL*HG002complexvar*
99.3944
99.2565
99.5327
58.0987
7636657276037357301
84.3137
ckim-dragenINDEL*HG002complexvarhet
99.6184
99.4569
99.7805
57.4574
459612514545810050
50.0000
ckim-dragenINDEL*HG002complexvarhetalt
95.4523
92.7548
98.3114
67.8279
343126836686363
100.0000
ckim-dragenINDEL*HG002complexvarhomalt
99.5434
99.8039
99.2843
57.4048
269745326911194188
96.9072
ckim-dragenINDELC16_PLUSHG002complexvar*
0.0000
0.0000
100.0000
66.6667
00100
ckim-dragenINDELC16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
100.0000
66.6667
00100
ckim-dragenINDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
0.0000
00000
ciseli-customSNP*HG002complexvar*
95.9712
96.9985
94.9655
20.7202
73174222643718679381008358
21.9370
ciseli-customSNP*HG002complexvarhet
95.7970
95.7987
95.7952
20.3525
4459431955743953919293621
3.2188
ciseli-customSNP*HG002complexvarhetalt
70.4724
57.7419
90.4040
39.8176
179131179199
47.3684
ciseli-customSNP*HG002complexvarhomalt
96.2605
98.9760
93.6900
21.2638
2856202955278961187887728
41.1326
ciseli-customINDELI16_PLUSHG002complexvar*
21.4346
13.1398
58.1315
77.3688
172113716812193
76.8595
ciseli-customINDELI16_PLUSHG002complexvarhet
19.4609
11.4286
65.4867
81.3223
76589743919
48.7179
ciseli-customINDELI16_PLUSHG002complexvarhetalt
0.0000
0.2985
0.0000
0.0000
1334000
ciseli-customINDELI16_PLUSHG002complexvarhomalt
39.0246
30.7443
53.4091
73.8095
95214948274
90.2439
ciseli-customINDELI6_15HG002complexvar*
36.3268
24.7913
67.9389
56.5783
118836041157546471
86.2637
ciseli-customINDELI6_15HG002complexvarhet
39.0345
26.1146
77.2559
60.9179
6151740625184138
75.0000
ciseli-customINDELI6_15HG002complexvarhetalt
0.0000
1.7171
0.0000
0.0000
211202000
ciseli-customINDELI6_15HG002complexvarhomalt
51.5500
45.4695
59.5078
51.7279
552662532362333
91.9890
gduggal-snapplatINDELI6_15HG002complexvar*
38.3420
26.7738
67.5124
60.4148
128335091224589145
24.6180
gduggal-snapplatINDELI6_15HG002complexvarhet
33.8586
23.3121
61.8312
60.5350
549180652032110
3.1153
gduggal-snapplatINDELI6_15HG002complexvarhetalt
51.2055
35.5683
91.3793
60.4433
4357884244034
85.0000
gduggal-snapplatINDELI6_15HG002complexvarhomalt
34.0455
24.6293
55.1181
60.1881
299915280228101
44.2982
gduggal-snapplatSNPtvHG002complexvar*
97.5342
96.7281
98.3538
26.8142
23810180542384503991673
16.8629
gduggal-snapplatSNPtvHG002complexvarhet
96.9038
96.2928
97.5225
28.0304
14514655881455273697526
14.2278
gduggal-snapplatSNPtvHG002complexvarhetalt
91.0113
86.7742
95.6835
42.9158
269412661212
100.0000
gduggal-snapplatSNPtvHG002complexvarhomalt
98.5607
97.4503
99.6966
24.7080
92686242592657282135
47.8723
gduggal-snapvardINDEL*HG002complexvar*
84.5803
84.0929
85.0735
55.5785
646961223873113128288678
67.6489
gduggal-snapvardINDEL*HG002complexvarhet
85.1014
90.1233
80.6095
59.0444
41646456451233123248222
66.7154
gduggal-snapvardINDEL*HG002complexvarhetalt
0.0000
38.0476
0.0000
0.0000
14072291000
gduggal-snapvardINDEL*HG002complexvarhomalt
88.0378
80.0821
97.7484
41.5287
21643538321880504456
90.4762
gduggal-snapvardINDELC16_PLUSHG002complexvar*
0.0000
0.0000
35.5556
72.5610
0016296
20.6897
gduggal-snapvardINDELC16_PLUSHG002complexvarhet
0.0000
0.0000
37.2093
71.1409
0016275
18.5185
gduggal-snapvardINDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
86.6667
00021
50.0000
gduggal-snapplatSNPtiHG002complexvar*
98.2167
97.8257
98.6108
20.9389
4973821105549779970131203
17.1539
gduggal-snapplatSNPtiHG002complexvarhet
97.6877
97.4934
97.8828
21.8010
30687678903074936651990
14.8850
gduggal-snapplatSNPtiHG002complexvarhetalt
90.1007
85.9903
94.6237
41.1392
178291761010
100.0000
gduggal-snapplatSNPtiHG002complexvarhomalt
99.0919
98.3790
99.8152
19.4474
1903283136190130352203
57.6705
gduggal-snapplatINDELI1_5HG002complexvar*
77.0714
71.7352
83.2654
65.6966
239339430243014884375
7.6781
gduggal-snapplatINDELI1_5HG002complexvarhet
73.7898
70.2842
77.6634
67.6709
127845405129763732123
3.2958
gduggal-snapplatINDELI1_5HG002complexvarhetalt
55.6197
42.0046
82.2940
85.5161
7251001739159112
70.4403
gduggal-snapplatINDELI1_5HG002complexvarhomalt
83.8960
77.5134
91.4241
57.4270
10424302410586993140
14.0987
gduggal-snapplatSNP*HG002complexvar*
97.9967
97.4708
98.5284
22.9400
73530519080736073109941866
16.9729
gduggal-snapplatSNP*HG002complexvarhet
97.4346
97.1046
97.7668
23.9217
45202213478453020103481516
14.6502