PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55351-55400 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | * | 99.6760 | 99.5874 | 99.7647 | 64.5930 | 48759 | 202 | 48752 | 115 | 21 | 18.2609 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | het | 99.5618 | 99.4285 | 99.6954 | 65.7218 | 30447 | 175 | 30440 | 93 | 9 | 9.6774 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.8065 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | homalt | 99.8662 | 99.8525 | 99.8798 | 62.5049 | 18282 | 27 | 18282 | 22 | 12 | 54.5455 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | * | 99.6651 | 99.5917 | 99.7386 | 65.1842 | 73662 | 302 | 73651 | 193 | 31 | 16.0622 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | het | 99.5523 | 99.4461 | 99.6587 | 66.2016 | 46142 | 257 | 46131 | 158 | 14 | 8.8608 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | homalt | 99.8546 | 99.8365 | 99.8728 | 63.2901 | 27478 | 45 | 27478 | 35 | 17 | 48.5714 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | * | 99.0853 | 98.9034 | 99.2678 | 81.4098 | 1894 | 21 | 1898 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | het | 99.0064 | 99.0446 | 98.9683 | 81.1940 | 1244 | 12 | 1247 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 90.2655 | 43 | 5 | 44 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 80.5937 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.6077 | 91.1111 | 90.1099 | 93.5046 | 82 | 8 | 82 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.7079 | 93.7500 | 86.0000 | 94.7917 | 45 | 3 | 43 | 7 | 2 | 28.5714 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9102 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 94.8177 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.2331 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.1176 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9747 | 98.6842 | 99.2669 | 82.6860 | 1350 | 18 | 1354 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.7326 | 98.1084 | 99.3647 | 83.4872 | 778 | 15 | 782 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.2670 | 41 | 3 | 41 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 80.3663 | 531 | 0 | 531 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 86.3520 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 86.0349 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1270 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.9377 | 31 | 2 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | * | 97.0986 | 95.0758 | 99.2095 | 85.1089 | 251 | 13 | 251 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | het | 97.6923 | 96.9466 | 98.4496 | 87.9664 | 127 | 4 | 127 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 94.5736 | 89.7059 | 100.0000 | 73.5931 | 61 | 7 | 61 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0909 | 63 | 2 | 63 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.8390 | 98.3187 | 95.4031 | 87.7576 | 1345 | 23 | 1349 | 65 | 7 | 10.7692 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 95.4195 | 98.1084 | 92.8741 | 89.6484 | 778 | 15 | 782 | 60 | 4 | 6.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9502 | 40 | 4 | 40 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 82.1116 | 527 | 4 | 527 | 5 | 3 | 60.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | * | 97.4962 | 99.1075 | 95.9365 | 74.4561 | 48524 | 437 | 48517 | 2055 | 194 | 9.4404 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | het | 96.4036 | 99.2424 | 93.7226 | 78.7202 | 30390 | 232 | 30383 | 2035 | 176 | 8.6487 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 93.5484 | 96.6667 | 90.6250 | 83.5897 | 29 | 1 | 29 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | homalt | 99.3934 | 98.8858 | 99.9062 | 60.1223 | 18105 | 204 | 18105 | 17 | 15 | 88.2353 | |