PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55301-55350 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9163 | 94.8276 | 99.0991 | 90.5932 | 110 | 6 | 110 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | het | 96.6667 | 95.0820 | 98.3051 | 92.1333 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.0312 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | * | 96.0000 | 95.4545 | 96.5517 | 89.8325 | 252 | 12 | 252 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | het | 94.7368 | 96.1832 | 93.3333 | 92.5456 | 126 | 5 | 126 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 75.2941 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.4251 | 63 | 2 | 63 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4333 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 95.6522 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8648 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.2174 | 92.2222 | 88.2979 | 95.8952 | 83 | 7 | 83 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.8187 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7118 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | * | 97.3274 | 96.9191 | 97.7392 | 88.6597 | 1856 | 59 | 1859 | 43 | 6 | 13.9535 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | het | 96.5708 | 96.3376 | 96.8051 | 89.9162 | 1210 | 46 | 1212 | 40 | 4 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 91.9922 | 40 | 8 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 84.1571 | 606 | 5 | 606 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | * | map_l100_m2_e0 | * | 95.3427 | 97.9691 | 92.8535 | 88.3944 | 3618 | 75 | 3625 | 279 | 28 | 10.0358 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | het | 93.6860 | 98.1795 | 89.5858 | 89.8045 | 2265 | 42 | 2271 | 264 | 22 | 8.3333 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7695 | 87.2000 | 99.0991 | 88.2788 | 109 | 16 | 110 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.7694 | 98.6519 | 98.8871 | 83.9295 | 1244 | 17 | 1244 | 14 | 6 | 42.8571 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | * | 99.6443 | 99.6005 | 99.6881 | 66.3015 | 24933 | 100 | 24929 | 78 | 10 | 12.8205 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | het | 99.5338 | 99.4803 | 99.5875 | 67.0941 | 15695 | 82 | 15691 | 65 | 5 | 7.6923 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | homalt | 99.8317 | 99.8046 | 99.8588 | 64.7570 | 9196 | 18 | 9196 | 13 | 5 | 38.4615 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.3889 | 91.6667 | 78.1818 | 96.3648 | 44 | 4 | 43 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 78.0000 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 80.0000 | 87.5000 | 73.6842 | 95.5916 | 14 | 2 | 14 | 5 | 2 | 40.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 95.2850 | 98.5379 | 92.2401 | 87.2851 | 1887 | 28 | 1890 | 159 | 11 | 6.9182 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 93.5776 | 98.9650 | 88.7464 | 88.5144 | 1243 | 13 | 1246 | 158 | 10 | 6.3291 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.3402 | 42 | 6 | 42 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1763 | 98.5270 | 99.8342 | 82.2959 | 602 | 9 | 602 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 92.7644 | 94.6970 | 90.9091 | 88.8709 | 250 | 14 | 250 | 25 | 3 | 12.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 89.6797 | 96.1832 | 84.0000 | 91.6574 | 126 | 5 | 126 | 24 | 3 | 12.5000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 72.8889 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 99.2248 | 98.4615 | 100.0000 | 85.7143 | 64 | 1 | 64 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||