PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55251-55300 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l100_m2_e0 | * | 77.0107 | 62.9198 | 99.2344 | 83.7056 | 46538 | 27426 | 46530 | 359 | 16 | 4.4568 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | het | 85.3365 | 74.9930 | 98.9898 | 84.8848 | 34796 | 11603 | 34788 | 355 | 13 | 3.6620 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.9640 | 14 | 28 | 14 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m2_e0 | homalt | 59.7529 | 42.6116 | 99.9659 | 78.6625 | 11728 | 15795 | 11728 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | * | 75.1758 | 60.6200 | 98.9306 | 85.6823 | 15175 | 9858 | 15172 | 164 | 1 | 0.6098 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | het | 84.3040 | 73.6198 | 98.6157 | 86.5798 | 11615 | 4162 | 11612 | 163 | 1 | 0.6135 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.9640 | 14 | 28 | 14 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | homalt | 55.5756 | 38.4849 | 99.9718 | 81.4225 | 3546 | 5668 | 3546 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | * | 98.3370 | 98.3753 | 98.2987 | 86.6371 | 3633 | 60 | 3640 | 63 | 16 | 25.3968 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | het | 98.1424 | 98.3528 | 97.9328 | 87.3523 | 2269 | 38 | 2274 | 48 | 10 | 20.8333 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 95.0068 | 91.2000 | 99.1453 | 87.6190 | 114 | 11 | 116 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.0099 | 99.1277 | 98.8924 | 84.9649 | 1250 | 11 | 1250 | 14 | 6 | 42.8571 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | * | 77.9188 | 64.0796 | 99.3822 | 82.5443 | 31374 | 17587 | 31369 | 195 | 15 | 7.6923 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | het | 85.8634 | 75.7005 | 99.1784 | 83.8574 | 23181 | 7441 | 23176 | 192 | 12 | 6.2500 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | hetalt | 53.6585 | 36.6667 | 100.0000 | 93.6416 | 11 | 19 | 11 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | homalt | 61.7649 | 44.6884 | 99.9633 | 77.1942 | 8182 | 10127 | 8182 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 98.1438 | 98.0157 | 98.2723 | 83.6389 | 1877 | 38 | 1877 | 33 | 12 | 36.3636 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 98.0946 | 98.3280 | 97.8622 | 83.1891 | 1235 | 21 | 1236 | 27 | 7 | 25.9259 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 83.3042 | 72.9167 | 97.1429 | 92.3077 | 35 | 13 | 34 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.2641 | 99.3453 | 99.1830 | 83.4862 | 607 | 4 | 607 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 78.7116 | 75.5556 | 82.1429 | 87.8613 | 68 | 22 | 69 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.0407 | 91.6667 | 77.5862 | 88.2114 | 44 | 4 | 45 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 61.5385 | 46.1538 | 92.3077 | 75.4717 | 12 | 14 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.1565 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | * | 97.4507 | 97.2380 | 97.6643 | 97.6120 | 3591 | 102 | 3596 | 86 | 39 | 45.3488 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | het | 97.5246 | 97.9627 | 97.0903 | 84.4521 | 2260 | 47 | 2269 | 68 | 29 | 42.6471 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 82.9138 | 72.0000 | 97.7273 | 89.6104 | 90 | 35 | 86 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5703 | 98.4140 | 98.7271 | 83.6796 | 1241 | 20 | 1241 | 16 | 9 | 56.2500 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3524 | 88.2576 | 92.5490 | 85.5524 | 233 | 31 | 236 | 19 | 11 | 57.8947 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 94.4089 | 98.4733 | 90.6667 | 87.1023 | 129 | 2 | 136 | 14 | 9 | 64.2857 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 77.3256 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.1832 | 96.9231 | 95.4545 | 84.6512 | 63 | 2 | 63 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | * | 97.7479 | 96.7105 | 98.8077 | 88.3990 | 1323 | 45 | 1326 | 16 | 4 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5990 | 94.8298 | 98.4355 | 90.5728 | 752 | 41 | 755 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.3782 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5305 | 99.8117 | 99.2509 | 82.4688 | 530 | 1 | 530 | 4 | 3 | 75.0000 | |