PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55001-55050 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | * | 98.2981 | 98.4295 | 98.1671 | 85.2737 | 3635 | 58 | 3642 | 68 | 13 | 19.1176 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | het | 98.0384 | 98.4395 | 97.6405 | 86.1291 | 2271 | 36 | 2276 | 55 | 7 | 12.7273 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | hetalt | 94.0678 | 88.8000 | 100.0000 | 88.2780 | 111 | 14 | 113 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | homalt | 99.1690 | 99.3656 | 98.9731 | 82.9472 | 1253 | 8 | 1253 | 13 | 6 | 46.1538 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | * | 99.5855 | 99.3929 | 99.7787 | 64.6417 | 73515 | 449 | 73504 | 163 | 49 | 30.0613 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | het | 99.4228 | 99.1250 | 99.7224 | 65.3363 | 45993 | 406 | 45982 | 128 | 32 | 25.0000 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.6802 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | homalt | 99.8583 | 99.8438 | 99.8728 | 63.3749 | 27480 | 43 | 27480 | 35 | 17 | 48.5714 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.4783 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.1176 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4359 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 86.6915 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 86.9048 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.2520 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.5486 | 32 | 1 | 32 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | * | 98.3520 | 99.0401 | 97.6734 | 71.9819 | 73254 | 710 | 73257 | 1745 | 322 | 18.4527 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | het | 97.8332 | 99.1530 | 96.5480 | 75.0125 | 46006 | 393 | 46009 | 1645 | 255 | 15.5015 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | homalt | 99.3166 | 99.0008 | 99.6343 | 64.4739 | 27248 | 275 | 27248 | 100 | 67 | 67.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | * | 68.8299 | 66.6667 | 71.1382 | 89.1868 | 176 | 88 | 175 | 71 | 65 | 91.5493 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 77.5758 | 97.7099 | 64.3216 | 90.1143 | 128 | 3 | 128 | 71 | 65 | 91.5493 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 1.4706 | 0.0000 | 0.0000 | 1 | 67 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.9286 | 72.3077 | 100.0000 | 82.0611 | 47 | 18 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | * | 91.5803 | 94.5692 | 88.7745 | 87.1803 | 1811 | 104 | 1811 | 229 | 65 | 28.3843 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | het | 91.5991 | 98.9650 | 85.2538 | 88.9688 | 1243 | 13 | 1243 | 215 | 63 | 29.3023 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.7816 | 94.2982 | 93.2706 | 87.7493 | 1290 | 78 | 1289 | 93 | 34 | 36.5591 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 94.1968 | 98.3607 | 90.3712 | 90.4265 | 780 | 13 | 779 | 83 | 29 | 34.9398 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 72.3005 | 66.3793 | 79.3814 | 88.9647 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | het | 79.6992 | 86.8852 | 73.6111 | 90.3356 | 53 | 8 | 53 | 19 | 15 | 78.9474 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.3433 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 61.1538 | 60.0000 | 62.3529 | 96.1223 | 54 | 36 | 53 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | het | 70.9677 | 91.6667 | 57.8947 | 95.2970 | 44 | 4 | 44 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 3.8462 | 0.0000 | 0.0000 | 1 | 25 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4375 | 9 | 7 | 9 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | * | 98.5956 | 99.0053 | 98.1892 | 70.8668 | 48474 | 487 | 48476 | 894 | 185 | 20.6935 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | het | 98.1558 | 99.0660 | 97.2621 | 74.0240 | 30336 | 286 | 30338 | 854 | 157 | 18.3841 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | homalt | 99.4217 | 99.0660 | 99.7800 | 63.1898 | 18138 | 171 | 18138 | 40 | 28 | 70.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 86.0000 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.1176 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | * | 80.0736 | 72.4343 | 89.5141 | 91.6820 | 2675 | 1018 | 2911 | 341 | 39 | 11.4370 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | het | 79.5566 | 73.6888 | 86.4399 | 92.5370 | 1700 | 607 | 1855 | 291 | 32 | 10.9966 | |