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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 7 8 9 10 11 12 13 14 15 ... 1720 1721 » 501-550 / 86044 show all
ckim-vqsr	INDEL	I1_5	*	*	99.3579	99.0515	99.6662	59.3791	149235	1429	149282	500	397	79.4000
ckim-vqsr	INDEL	I1_5	*	het	99.5998	99.5116	99.6881	61.9903	78655	386	78634	246	145	58.9431
ckim-vqsr	INDEL	I1_5	*	hetalt	95.5907	91.5945	99.9516	60.1444	10254	941	10316	5	5	100.0000
ckim-vqsr	INDEL	I1_5	*	homalt	99.7099	99.8312	99.5890	55.2277	60326	102	60332	249	247	99.1968
ckim-vqsr	INDEL	I6_15	*	*	97.6524	96.7691	98.5520	52.9508	24021	802	24026	353	331	93.7677
ckim-vqsr	INDEL	I6_15	*	het	99.0039	98.6943	99.3155	60.3259	9902	131	9866	68	49	72.0588
ckim-vqsr	INDEL	I6_15	*	hetalt	95.9384	92.2582	99.9244	35.7201	7889	662	7930	6	5	83.3333
ckim-vqsr	INDEL	I6_15	*	homalt	97.7408	99.8557	95.7136	54.8957	6230	9	6230	279	277	99.2832
ckim-vqsr	SNP	*	*	*	99.2866	98.6511	99.9303	23.6837	3013415	41204	3013272	2101	144	6.8539
ckim-vqsr	SNP	*	*	het	99.4736	99.0611	99.8894	26.9578	1855996	17591	1855876	2054	101	4.9172
ckim-vqsr	SNP	*	*	hetalt	97.4148	95.1780	99.7593	54.6645	829	42	829	2	2	100.0000
ckim-vqsr	SNP	*	*	homalt	98.9894	98.0027	99.9961	17.7187	1156590	23571	1156567	45	41	91.1111
ckim-vqsr	SNP	ti	*	*	99.3455	98.7474	99.9510	21.8102	2059387	26124	2059330	1009	89	8.8206
ckim-vqsr	SNP	ti	*	het	99.5238	99.1280	99.9229	24.8520	1270713	11178	1270665	981	62	6.3201
ckim-vqsr	SNP	ti	*	hetalt	97.3638	95.1890	99.6403	53.2773	554	28	554	2	2	100.0000
ckim-vqsr	SNP	ti	*	homalt	99.0608	98.1423	99.9967	16.3042	788120	14918	788111	26	25	96.1538
ckim-vqsr	SNP	tv	*	*	99.1585	98.4420	99.8855	27.4583	954582	15108	954496	1094	57	5.2102
ckim-vqsr	SNP	tv	*	het	99.3645	98.9162	99.8170	31.1430	585283	6413	585211	1073	39	3.6347
ckim-vqsr	SNP	tv	*	hetalt	97.4148	95.1780	99.7593	54.6645	829	42	829	2	2	100.0000
ckim-vqsr	SNP	tv	*	homalt	98.8369	97.7055	99.9948	20.5893	368470	8653	368456	19	16	84.2105
dgrover-gatk	INDEL	*	*	*	99.4009	99.3458	99.4561	60.2776	342288	2254	342154	1871	1513	80.8658
dgrover-gatk	INDEL	*	*	het	99.5990	99.6559	99.5422	61.2168	193465	668	193091	888	555	62.5000
dgrover-gatk	INDEL	*	*	hetalt	96.9073	94.2584	99.7094	58.4640	23788	1449	24018	70	68	97.1429
dgrover-gatk	INDEL	*	*	homalt	99.5819	99.8906	99.2752	59.0938	125035	137	125045	913	890	97.4808
dgrover-gatk	INDEL	C16_PLUS	*	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	*	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	*	*	0.0000	90.0000	0.0000	0.0000	9	1	0	0	0
dgrover-gatk	INDEL	C1_5	*	het	0.0000	88.8889	0.0000	0.0000	8	1	0	0	0
dgrover-gatk	INDEL	C1_5	*	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
dgrover-gatk	INDEL	C1_5	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	*	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	het	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D16_PLUS	*	*	97.8781	98.0395	97.7172	70.6733	6651	133	6635	155	103	66.4516
dgrover-gatk	INDEL	D16_PLUS	*	het	97.8168	99.3036	96.3739	78.4222	3137	22	2897	109	66	60.5505
dgrover-gatk	INDEL	D16_PLUS	*	hetalt	96.8869	94.5680	99.3224	39.0920	1828	105	2052	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	*	homalt	98.8856	99.6454	98.1374	70.5317	1686	6	1686	32	23	71.8750
dgrover-gatk	INDEL	D1_5	*	*	99.6144	99.5271	99.7018	60.8244	146051	694	146107	437	317	72.5400
dgrover-gatk	INDEL	D1_5	*	het	99.7614	99.7979	99.7250	59.4296	87397	177	87406	241	125	51.8672
dgrover-gatk	INDEL	D1_5	*	hetalt	97.3217	95.1977	99.5427	63.5299	9753	492	9795	45	43	95.5556
dgrover-gatk	INDEL	D1_5	*	homalt	99.8204	99.9489	99.6922	62.5668	48901	25	48906	151	149	98.6755
dgrover-gatk	INDEL	D6_15	*	*	98.3523	98.1412	98.5642	55.1444	25607	485	25606	373	340	91.1528
dgrover-gatk	INDEL	D6_15	*	het	98.8856	99.4565	98.3212	62.9800	11529	63	11479	196	167	85.2041
dgrover-gatk	INDEL	D6_15	*	hetalt	97.1534	94.9352	99.4777	33.7944	7760	414	7809	41	39	95.1220
dgrover-gatk	INDEL	D6_15	*	homalt	98.8732	99.8735	97.8928	55.5601	6318	8	6318	136	134	98.5294
dgrover-gatk	INDEL	I16_PLUS	*	*	97.6461	96.9265	98.3766	71.1206	6181	196	6181	102	80	78.4314
dgrover-gatk	INDEL	I16_PLUS	*	het	98.6296	98.3076	98.9537	76.0151	2672	46	2648	28	9	32.1429

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