PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54901-54950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | * | 86.0203 | 89.1958 | 83.0632 | 86.5245 | 3294 | 399 | 4561 | 930 | 439 | 47.2043 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | het | 85.0151 | 94.3650 | 77.3510 | 88.3503 | 2177 | 130 | 3101 | 908 | 421 | 46.3656 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 36.0000 | 0.0000 | 0.0000 | 45 | 80 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | homalt | 91.2669 | 85.0119 | 98.5155 | 76.6062 | 1072 | 189 | 1460 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | * | 82.2996 | 77.9971 | 87.1046 | 92.4495 | 1067 | 301 | 1074 | 159 | 8 | 5.0315 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9130 | 78.6885 | 83.2669 | 93.4516 | 624 | 169 | 627 | 126 | 3 | 2.3810 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 32.3741 | 22.7273 | 56.2500 | 98.1352 | 10 | 34 | 9 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 87.5010 | 81.5443 | 94.3966 | 88.3212 | 433 | 98 | 438 | 26 | 1 | 3.8462 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | * | 95.7724 | 94.3751 | 97.2116 | 76.1299 | 46207 | 2754 | 46228 | 1326 | 687 | 51.8100 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | het | 95.5194 | 95.3171 | 95.7225 | 80.1164 | 29188 | 1434 | 29226 | 1306 | 667 | 51.0720 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | hetalt | 86.1538 | 93.3333 | 80.0000 | 81.7708 | 28 | 2 | 28 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | homalt | 96.2308 | 92.8014 | 99.9235 | 62.6446 | 16991 | 1318 | 16974 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | * | 17.1429 | 10.3448 | 50.0000 | 94.9192 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | het | 17.8344 | 11.4754 | 40.0000 | 94.1406 | 7 | 54 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 22 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.7500 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | * | 98.1873 | 97.4817 | 98.9032 | 83.5913 | 3600 | 93 | 3607 | 40 | 9 | 22.5000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | het | 97.7908 | 96.8357 | 98.7649 | 83.7444 | 2234 | 73 | 2239 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | hetalt | 94.9580 | 90.4000 | 100.0000 | 87.9958 | 113 | 12 | 115 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | homalt | 99.2082 | 99.3656 | 99.0514 | 82.7233 | 1253 | 8 | 1253 | 12 | 5 | 41.6667 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | * | 97.8210 | 98.9893 | 96.6799 | 73.9056 | 24780 | 253 | 24781 | 851 | 137 | 16.0987 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | het | 97.2146 | 99.3218 | 95.1950 | 76.6930 | 15670 | 107 | 15671 | 791 | 98 | 12.3894 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | homalt | 99.1079 | 98.8713 | 99.3457 | 66.7718 | 9110 | 104 | 9110 | 60 | 39 | 65.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 93.0250 | 83 | 7 | 83 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.8757 | 95.8333 | 84.6154 | 94.4622 | 46 | 2 | 44 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5714 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 93.8907 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5254 | 97.6501 | 99.4164 | 81.4523 | 1870 | 45 | 1874 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.1096 | 97.0541 | 99.1883 | 80.7169 | 1219 | 37 | 1222 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 91.0714 | 44 | 4 | 45 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 81.4067 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.9231 | 95.4545 | 98.4375 | 84.3807 | 252 | 12 | 252 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9466 | 96.9466 | 96.9466 | 86.8606 | 127 | 4 | 127 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.0000 | 62 | 6 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0102 | 63 | 2 | 63 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||