PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54651-54700 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | * | 99.3135 | 98.8379 | 99.7938 | 59.0138 | 48392 | 569 | 48394 | 100 | 29 | 29.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | het | 99.0198 | 98.3084 | 99.7416 | 57.0120 | 30104 | 518 | 30106 | 78 | 7 | 8.9744 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.2921 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | homalt | 99.8005 | 99.7214 | 99.8796 | 61.9278 | 18258 | 51 | 18258 | 22 | 22 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | * | 99.2918 | 98.8495 | 99.7380 | 59.7315 | 24745 | 288 | 24740 | 65 | 9 | 13.8462 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | het | 98.9599 | 98.3013 | 99.6273 | 57.1739 | 15509 | 268 | 15505 | 58 | 5 | 8.6207 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8534 | 99.7829 | 99.9239 | 63.3991 | 9194 | 20 | 9193 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | * | 97.6394 | 96.3174 | 98.9983 | 79.7338 | 3557 | 136 | 3558 | 36 | 6 | 16.6667 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | het | 97.4110 | 96.2722 | 98.5771 | 78.4124 | 2221 | 86 | 2217 | 32 | 4 | 12.5000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | hetalt | 91.3043 | 84.0000 | 100.0000 | 91.9488 | 105 | 20 | 107 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | homalt | 98.6382 | 97.6209 | 99.6769 | 78.6515 | 1231 | 30 | 1234 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l100_m2_e0 | * | 97.7249 | 97.6634 | 97.7865 | 68.9717 | 47817 | 1144 | 47800 | 1082 | 275 | 25.4159 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | het | 97.1509 | 97.7892 | 96.5210 | 73.0558 | 29945 | 677 | 29963 | 1080 | 273 | 25.2778 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m2_e0 | homalt | 98.7027 | 97.4493 | 99.9888 | 57.8553 | 17842 | 467 | 17837 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l100_m2_e0 | * | 97.1975 | 97.9028 | 96.5023 | 71.7198 | 24508 | 525 | 24500 | 888 | 133 | 14.9775 | |
| cchapple-custom | SNP | tv | map_l100_m2_e0 | het | 96.2979 | 98.0731 | 94.5857 | 75.5847 | 15473 | 304 | 15513 | 888 | 133 | 14.9775 | |
| cchapple-custom | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 42 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m2_e0 | homalt | 98.7862 | 97.6015 | 100.0000 | 60.2310 | 8993 | 221 | 8987 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 8.6957 | 97.4918 | 0 | 0 | 2 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 33.3333 | 99.1329 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 5.0000 | 96.4974 | 0 | 0 | 1 | 19 | 4 | 21.0526 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | * | 70.8083 | 66.3417 | 75.9196 | 88.0680 | 2450 | 1243 | 2456 | 779 | 514 | 65.9820 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | het | 73.2740 | 70.9580 | 75.7464 | 88.9861 | 1637 | 670 | 1649 | 528 | 311 | 58.9015 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 4.8000 | 0.0000 | 0.0000 | 6 | 119 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m2_e0 | homalt | 69.5990 | 63.9968 | 76.2760 | 85.5956 | 807 | 454 | 807 | 251 | 203 | 80.8765 | |
| ciseli-custom | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 98.5915 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 79.9976 | 76.6057 | 83.7037 | 88.2507 | 1467 | 448 | 1469 | 286 | 139 | 48.6014 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 79.5047 | 74.8408 | 84.7885 | 89.8548 | 940 | 316 | 942 | 169 | 39 | 23.0769 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 4.1667 | 0.0000 | 0.0000 | 2 | 46 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 83.8286 | 85.9247 | 81.8323 | 83.8435 | 525 | 86 | 527 | 117 | 100 | 85.4701 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 44.1674 | 34.4444 | 61.5385 | 89.4737 | 31 | 59 | 32 | 20 | 14 | 70.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 53.6585 | 68.7500 | 44.0000 | 90.2724 | 11 | 5 | 11 | 14 | 11 | 78.5714 | |