PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54601-54650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.1325 | 64.4444 | 54.6296 | 93.1904 | 58 | 32 | 59 | 49 | 15 | 30.6122 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | het | 63.1579 | 66.6667 | 60.0000 | 93.0991 | 32 | 16 | 33 | 22 | 8 | 36.3636 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 57.8947 | 42.3077 | 91.6667 | 78.1818 | 11 | 15 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 52.6316 | 93.7500 | 36.5854 | 94.4142 | 15 | 1 | 15 | 26 | 7 | 26.9231 | |
| mlin-fermikit | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 95.9847 | 95.0758 | 96.9112 | 89.8431 | 251 | 13 | 251 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 92.5431 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.6863 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 87.3494 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.7398 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9054 | 32 | 1 | 32 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | * | 89.4136 | 82.0994 | 98.1585 | 79.7900 | 60724 | 13240 | 60713 | 1139 | 79 | 6.9359 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | het | 92.2826 | 87.7562 | 97.3014 | 82.8537 | 40718 | 5681 | 40707 | 1129 | 70 | 6.2002 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | homalt | 84.0977 | 72.5829 | 99.9550 | 67.6272 | 19977 | 7546 | 19977 | 9 | 8 | 88.8889 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | * | 89.9408 | 82.7455 | 98.5068 | 78.6206 | 40513 | 8448 | 40506 | 614 | 64 | 10.4235 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | het | 92.7126 | 88.1229 | 97.8066 | 81.8391 | 26985 | 3637 | 26978 | 605 | 56 | 9.2562 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 83.0189 | 73.3333 | 95.6522 | 88.2653 | 22 | 8 | 22 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | homalt | 84.8820 | 73.7670 | 99.9408 | 66.4315 | 13506 | 4803 | 13506 | 8 | 7 | 87.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8271 | 98.5380 | 97.1264 | 88.2650 | 1348 | 20 | 1352 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 96.8975 | 98.1084 | 95.7160 | 90.3622 | 778 | 15 | 782 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.6465 | 41 | 3 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3427 | 99.6234 | 99.0637 | 82.1345 | 529 | 2 | 529 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 96.9664 | 98.3290 | 95.6412 | 88.3941 | 1883 | 32 | 1887 | 86 | 8 | 9.3023 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.1316 | 98.7261 | 93.6699 | 89.5668 | 1240 | 16 | 1243 | 84 | 6 | 7.1429 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 92.1905 | 40 | 8 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1776 | 98.6907 | 99.6694 | 83.8924 | 603 | 8 | 603 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4380 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 96.1207 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.2973 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.2074 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.8085 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.4359 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7273 | 0 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | * | 99.3059 | 98.8413 | 99.7748 | 59.2762 | 73107 | 857 | 73104 | 165 | 38 | 23.0303 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | het | 98.9994 | 98.3060 | 99.7027 | 57.0672 | 45613 | 786 | 45611 | 136 | 12 | 8.8235 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | homalt | 99.8182 | 99.7420 | 99.8945 | 62.4790 | 27452 | 71 | 27451 | 29 | 26 | 89.6552 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0856 | 78.8889 | 97.1831 | 84.3612 | 71 | 19 | 69 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 91.2052 | 87.5000 | 95.2381 | 86.0000 | 42 | 6 | 40 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 81.4815 | 68.7500 | 100.0000 | 86.9565 | 11 | 5 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 96.8750 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||