PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54351-54400 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | * | 97.3112 | 96.9402 | 97.6852 | 97.7103 | 3580 | 113 | 3587 | 85 | 38 | 44.7059 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | het | 97.3029 | 97.3992 | 97.2067 | 83.9816 | 2247 | 60 | 2262 | 65 | 26 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 83.7547 | 75.2000 | 94.5055 | 89.4798 | 94 | 31 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | * | 72.7673 | 60.4532 | 91.3812 | 78.4780 | 827 | 541 | 827 | 78 | 68 | 87.1795 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | het | 71.6654 | 57.2509 | 95.7806 | 78.7349 | 454 | 339 | 454 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 64.6154 | 47.7273 | 100.0000 | 87.8613 | 21 | 23 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | * | 76.7503 | 68.1034 | 87.9121 | 83.6036 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | het | 82.5467 | 77.0492 | 88.8889 | 82.1192 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 78.5714 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | homalt | 68.9655 | 60.6061 | 80.0000 | 87.3096 | 20 | 13 | 20 | 5 | 5 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | * | 73.5756 | 61.3876 | 91.8021 | 54.4848 | 30056 | 18905 | 30056 | 2684 | 2362 | 88.0030 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | het | 72.2999 | 57.0570 | 98.6561 | 56.4180 | 17472 | 13150 | 17472 | 238 | 9 | 3.7815 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 72.0930 | 12 | 18 | 12 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | homalt | 75.4463 | 68.6657 | 83.7129 | 51.9470 | 12572 | 5737 | 12572 | 2446 | 2353 | 96.1979 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | * | 71.0756 | 59.1180 | 89.0970 | 57.6083 | 14799 | 10234 | 14791 | 1810 | 1594 | 88.0663 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | het | 70.4610 | 54.8457 | 98.5073 | 60.6122 | 8653 | 7124 | 8645 | 131 | 2 | 1.5267 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | homalt | 72.0127 | 66.5183 | 78.4964 | 53.5791 | 6129 | 3085 | 6129 | 1679 | 1592 | 94.8183 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | * | 72.7370 | 60.6281 | 90.8897 | 55.5979 | 44843 | 29121 | 44835 | 4494 | 3956 | 88.0285 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | het | 71.6803 | 56.3051 | 98.6068 | 57.9033 | 26125 | 20274 | 26117 | 369 | 11 | 2.9810 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m2_e0 | homalt | 74.2855 | 67.9468 | 81.9285 | 52.5634 | 18701 | 8822 | 18701 | 4125 | 3945 | 95.6364 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 89.7959 | 84.6154 | 95.6522 | 81.6000 | 22 | 4 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.4286 | 88.8889 | 94.1176 | 76.7123 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 88.8889 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.7826 | 81.2500 | 88.6364 | 91.1824 | 39 | 9 | 39 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 67.3077 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | het | 91.3793 | 86.8852 | 96.3636 | 85.8612 | 53 | 8 | 53 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.7778 | 100.0000 | 95.6522 | 79.4643 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.5484 | 87.8788 | 100.0000 | 87.7637 | 29 | 4 | 29 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7206 | 98.6423 | 98.7990 | 83.5904 | 1889 | 26 | 1892 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4460 | 98.2484 | 98.6443 | 83.0632 | 1234 | 22 | 1237 | 17 | 4 | 23.5294 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | * | 95.0570 | 94.6970 | 95.4198 | 86.1887 | 250 | 14 | 250 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | het | 94.8148 | 97.7099 | 92.0863 | 88.5691 | 128 | 3 | 128 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 73.6607 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6744 | 96.9231 | 98.4375 | 85.9956 | 63 | 2 | 63 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | * | 99.2885 | 99.2370 | 99.3401 | 66.0825 | 24842 | 191 | 24838 | 165 | 80 | 48.4848 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | het | 99.1350 | 99.1697 | 99.1004 | 66.6194 | 15646 | 131 | 15642 | 142 | 59 | 41.5493 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | homalt | 99.5649 | 99.3488 | 99.7820 | 64.8909 | 9154 | 60 | 9154 | 20 | 18 | 90.0000 | |