PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54251-54300 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 73.0769 | 0.0000 | 0.0000 | 19 | 7 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1436 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | * | 97.9477 | 97.5088 | 98.3906 | 98.2302 | 3601 | 92 | 3607 | 59 | 27 | 45.7627 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | het | 97.6728 | 97.2258 | 98.1239 | 84.2550 | 2243 | 64 | 2249 | 43 | 19 | 44.1860 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | hetalt | 92.8870 | 88.8000 | 97.3684 | 89.1841 | 111 | 14 | 111 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | homalt | 98.9290 | 98.8898 | 98.9683 | 83.3597 | 1247 | 14 | 1247 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | * | 99.4052 | 99.4847 | 99.3259 | 66.9200 | 24904 | 129 | 24900 | 169 | 5 | 2.9586 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | het | 99.1552 | 99.3345 | 98.9766 | 69.6214 | 15672 | 105 | 15668 | 162 | 1 | 0.6173 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.8479 | 99.7612 | 99.9348 | 60.9327 | 9192 | 22 | 9192 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | * | 99.3403 | 99.3525 | 99.3281 | 64.7470 | 48644 | 317 | 48637 | 329 | 19 | 5.7751 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | het | 99.0553 | 99.1379 | 98.9728 | 67.5282 | 30358 | 264 | 30351 | 315 | 6 | 1.9048 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 65.1685 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | homalt | 99.8196 | 99.7105 | 99.9288 | 58.8267 | 18256 | 53 | 18256 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.3491 | 97.8801 | 98.8227 | 82.1466 | 1339 | 29 | 1343 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | het | 97.8495 | 97.3518 | 98.3523 | 82.6097 | 772 | 21 | 776 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.2204 | 40 | 4 | 40 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3402 | 99.2467 | 99.4340 | 80.8110 | 527 | 4 | 527 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 94.2222 | 91.3793 | 97.2477 | 84.0176 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 83.4320 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 77.5281 | 20 | 2 | 20 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | * | 99.3627 | 99.3970 | 99.3284 | 65.5143 | 73518 | 446 | 73507 | 497 | 23 | 4.6278 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | het | 99.0893 | 99.2047 | 98.9741 | 68.2725 | 46030 | 369 | 46019 | 477 | 7 | 1.4675 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | homalt | 99.8291 | 99.7275 | 99.9308 | 59.5568 | 27448 | 75 | 27448 | 19 | 15 | 78.9474 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6927 | 97.2846 | 98.1043 | 82.7144 | 1863 | 52 | 1863 | 36 | 17 | 47.2222 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 97.8087 | 97.6911 | 97.9266 | 82.2279 | 1227 | 29 | 1228 | 26 | 9 | 34.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.9370 | 99.0180 | 98.8562 | 82.4087 | 605 | 6 | 605 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3148 | 89.3939 | 91.2548 | 85.9433 | 236 | 28 | 240 | 23 | 11 | 47.8261 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 93.1342 | 96.9466 | 89.6104 | 87.6997 | 127 | 4 | 138 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 74.2690 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.9231 | 96.9231 | 96.9231 | 85.4911 | 63 | 2 | 63 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1542 | 93.1034 | 97.2973 | 86.5942 | 108 | 8 | 108 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.6115 | 20 | 2 | 20 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.0130 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.1183 | 81.1111 | 85.2273 | 88.2353 | 73 | 17 | 75 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.8721 | 89.5833 | 82.4561 | 89.4834 | 43 | 5 | 47 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 75.1105 | 65.3846 | 88.2353 | 72.5806 | 17 | 9 | 15 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.2778 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |