PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54201-54250 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.1379 | 0 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.1886 | 0 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.6111 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 36.3200 | 81.6092 | 23.3577 | 88.6542 | 71 | 16 | 64 | 210 | 1 | 0.4762 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 38.9095 | 89.1304 | 24.8869 | 85.7327 | 41 | 5 | 55 | 166 | 1 | 0.6024 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 73.0769 | 0.0000 | 0.0000 | 19 | 7 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 27.5766 | 73.3333 | 16.9811 | 93.8799 | 11 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 89.8865 | 83.4416 | 97.4105 | 87.5446 | 1542 | 306 | 1768 | 47 | 35 | 74.4681 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 89.6970 | 83.6228 | 96.7227 | 89.7617 | 1011 | 198 | 1151 | 39 | 27 | 69.2308 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 89.4118 | 80.8511 | 100.0000 | 95.5556 | 38 | 9 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 90.3416 | 83.2770 | 98.7159 | 78.5468 | 493 | 99 | 615 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | * | 99.3542 | 98.8671 | 99.8462 | 61.3943 | 47388 | 543 | 47390 | 73 | 38 | 52.0548 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | het | 99.0953 | 98.4002 | 99.8002 | 62.6312 | 29463 | 479 | 29465 | 59 | 24 | 40.6780 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 90.9091 | 86.2069 | 96.1538 | 77.1930 | 25 | 4 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | homalt | 99.7965 | 99.6659 | 99.9274 | 59.1233 | 17900 | 60 | 17900 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | * | 99.3576 | 98.8807 | 99.8392 | 63.3838 | 48413 | 548 | 48415 | 78 | 40 | 51.2821 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | het | 99.1023 | 98.4194 | 99.7947 | 64.2605 | 30138 | 484 | 30140 | 62 | 24 | 38.7097 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 91.2281 | 86.6667 | 96.2963 | 79.0698 | 26 | 4 | 26 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | homalt | 99.7949 | 99.6723 | 99.9179 | 61.7916 | 18249 | 60 | 18249 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | * | 99.2917 | 98.8335 | 99.7541 | 64.3936 | 24741 | 292 | 24741 | 61 | 24 | 39.3443 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | het | 99.0369 | 98.4154 | 99.6662 | 64.6823 | 15527 | 250 | 15527 | 52 | 17 | 32.6923 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.7609 | 99.6093 | 99.9129 | 63.7805 | 9178 | 36 | 9178 | 8 | 6 | 75.0000 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | * | 84.2312 | 79.3934 | 89.6968 | 87.9330 | 2932 | 761 | 3787 | 435 | 68 | 15.6322 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | het | 83.5804 | 79.9740 | 87.5274 | 89.7430 | 1845 | 462 | 2400 | 342 | 54 | 15.7895 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | hetalt | 85.8447 | 75.2000 | 100.0000 | 91.2621 | 94 | 31 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m2_e0 | homalt | 85.5333 | 78.7470 | 93.5994 | 81.7141 | 993 | 268 | 1360 | 93 | 14 | 15.0538 | |
| qzeng-custom | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 79.5775 | 0 | 0 | 0 | 29 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 76.1364 | 0 | 0 | 0 | 21 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 85.1852 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 90.1218 | 83.8120 | 97.4590 | 87.8583 | 1605 | 310 | 1841 | 48 | 35 | 72.9167 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 89.9373 | 83.9968 | 96.7820 | 89.9588 | 1055 | 201 | 1203 | 40 | 27 | 67.5000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 88.3721 | 79.1667 | 100.0000 | 96.0784 | 38 | 10 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 90.6644 | 83.7971 | 98.7578 | 79.4118 | 512 | 99 | 636 | 8 | 8 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.2138 | 0 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.2523 | 0 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.7952 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 36.0728 | 82.2222 | 23.1047 | 89.1924 | 74 | 16 | 64 | 213 | 1 | 0.4695 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 38.5430 | 89.5833 | 24.5536 | 86.4897 | 43 | 5 | 55 | 169 | 1 | 0.5917 | |