PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54151-54200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 82.5627 | 71.8147 | 97.0940 | 78.6652 | 372 | 146 | 568 | 17 | 3 | 17.6471 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 56.7042 | 73.6842 | 46.0843 | 75.6598 | 84 | 30 | 153 | 179 | 4 | 2.2346 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 52.7792 | 76.2712 | 40.3509 | 76.8057 | 45 | 14 | 92 | 136 | 4 | 2.9412 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 61.0583 | 75.7576 | 51.1364 | 71.4286 | 25 | 8 | 45 | 43 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | * | 87.5018 | 78.7403 | 98.4572 | 75.1333 | 37741 | 10190 | 37460 | 587 | 485 | 82.6235 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | het | 87.3398 | 78.8625 | 97.8592 | 80.1613 | 23613 | 6329 | 23496 | 514 | 414 | 80.5447 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | hetalt | 81.6327 | 68.9655 | 100.0000 | 88.0952 | 20 | 9 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m1_e0 | homalt | 87.7858 | 78.5523 | 99.4792 | 55.9352 | 14108 | 3852 | 13944 | 73 | 71 | 97.2603 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | * | 97.2875 | 96.9325 | 97.6451 | 97.5899 | 3476 | 110 | 3483 | 84 | 38 | 45.2381 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | het | 97.2839 | 97.4049 | 97.1631 | 83.0935 | 2177 | 58 | 2192 | 64 | 26 | 40.6250 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 84.1295 | 75.8065 | 94.5055 | 88.4664 | 94 | 30 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | * | 76.2909 | 67.5439 | 87.6404 | 81.8367 | 77 | 37 | 78 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | het | 81.9153 | 76.2712 | 88.4615 | 80.2281 | 45 | 14 | 46 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 75.0000 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | homalt | 68.9655 | 60.6061 | 80.0000 | 86.0335 | 20 | 13 | 20 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | * | 70.4651 | 58.3772 | 88.8661 | 53.8051 | 14303 | 10198 | 14295 | 1791 | 1587 | 88.6097 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | het | 69.7650 | 53.9859 | 98.5774 | 56.8653 | 8323 | 7094 | 8315 | 120 | 2 | 1.6667 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | homalt | 71.5194 | 65.9516 | 78.1139 | 49.8226 | 5964 | 3079 | 5964 | 1671 | 1585 | 94.8534 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | * | 72.2095 | 59.9657 | 90.7360 | 51.7425 | 43417 | 28986 | 43409 | 4432 | 3924 | 88.5379 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | het | 71.0748 | 55.5458 | 98.6565 | 54.0604 | 25195 | 20164 | 25187 | 343 | 11 | 3.2070 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m1_e0 | homalt | 73.8610 | 67.4221 | 81.6596 | 48.7624 | 18206 | 8797 | 18206 | 4089 | 3913 | 95.6958 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | * | 73.0893 | 60.7644 | 91.6861 | 50.6018 | 29125 | 18806 | 29125 | 2641 | 2337 | 88.4892 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | het | 71.7393 | 56.3489 | 98.6955 | 52.5376 | 16872 | 13070 | 16872 | 223 | 9 | 4.0359 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | hetalt | 55.0000 | 37.9310 | 100.0000 | 70.2703 | 11 | 18 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | homalt | 75.0582 | 68.1626 | 83.5061 | 48.1080 | 12242 | 5718 | 12242 | 2418 | 2328 | 96.2779 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | * | map_l100_m1_e0 | * | 83.9800 | 79.0296 | 89.5920 | 87.4621 | 2834 | 752 | 3667 | 426 | 66 | 15.4930 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | het | 83.3456 | 79.6421 | 87.4105 | 89.3842 | 1780 | 455 | 2319 | 334 | 53 | 15.8683 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | hetalt | 86.2385 | 75.8065 | 100.0000 | 90.2527 | 94 | 30 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m1_e0 | homalt | 85.1872 | 78.2396 | 93.4890 | 80.8459 | 960 | 267 | 1321 | 92 | 13 | 14.1304 | |
| qzeng-custom | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 77.1654 | 0 | 0 | 0 | 29 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 72.7273 | 0 | 0 | 0 | 21 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 84.0000 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | * | 99.2885 | 98.8123 | 99.7692 | 62.3765 | 24210 | 291 | 24210 | 56 | 24 | 42.8571 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | het | 99.0304 | 98.3784 | 99.6911 | 62.9947 | 15167 | 250 | 15167 | 47 | 17 | 36.1702 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.7619 | 99.6130 | 99.9113 | 61.1747 | 9008 | 35 | 9008 | 8 | 6 | 75.0000 | |