PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 104 105 106 107 108 109 110 111 112 ... 1720 1721 » 5351-5400 / 86044 show all
ckim-gatk	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	*	HG002complexvar	*	99.3276	99.0226	99.6345	58.1713	76186	752	76048	279	226	81.0036
ckim-gatk	INDEL	*	HG002complexvar	het	99.6665	99.5780	99.7552	57.8728	46017	195	45636	112	64	57.1429
ckim-gatk	INDEL	*	HG002complexvar	hetalt	91.5474	85.7529	98.1818	66.4439	3172	527	3402	63	63	100.0000
ckim-gatk	INDEL	*	HG002complexvar	homalt	99.7525	99.8890	99.6164	57.3371	26997	30	27010	104	99	95.1923
ckim-dragen	INDEL	I6_15	HG002complexvar	*	98.1726	97.5167	98.8375	57.3399	4673	119	4676	55	54	98.1818
ckim-dragen	INDEL	I6_15	HG002complexvar	het	99.2082	98.6412	99.7818	59.3866	2323	32	2286	5	4	80.0000
ckim-dragen	INDEL	I6_15	HG002complexvar	hetalt	96.4437	93.1316	100.0000	55.3409	1139	84	1179	0	0
ckim-dragen	INDEL	I6_15	HG002complexvar	homalt	97.8586	99.7529	96.0349	55.1086	1211	3	1211	50	50	100.0000
ckim-dragen	SNP	*	HG002complexvar	*	99.9301	99.9223	99.9379	19.4552	753795	586	754278	469	236	50.3198
ckim-dragen	SNP	*	HG002complexvar	het	99.9146	99.9212	99.9081	19.1598	465130	367	465401	428	195	45.5607
ckim-dragen	SNP	*	HG002complexvar	hetalt	99.8384	99.6774	100.0000	39.2996	309	1	312	0	0
ckim-dragen	SNP	*	HG002complexvar	homalt	99.9551	99.9245	99.9858	19.8995	288356	218	288565	41	41	100.0000
ckim-dragen	SNP	tv	HG002complexvar	*	99.9267	99.9175	99.9359	22.5633	245949	203	246200	158	80	50.6329
ckim-dragen	SNP	tv	HG002complexvar	het	99.9058	99.9098	99.9019	22.2740	150595	136	150740	148	70	47.2973
ckim-dragen	SNP	tv	HG002complexvar	hetalt	99.8384	99.6774	100.0000	39.2996	309	1	312	0	0
ckim-dragen	SNP	tv	HG002complexvar	homalt	99.9600	99.9306	99.9895	22.9484	95045	66	95148	10	10	100.0000
ckim-gatk	INDEL	D6_15	HG002complexvar	*	98.1151	97.6990	98.5347	58.5306	5180	122	5178	77	70	90.9091
ckim-gatk	INDEL	D6_15	HG002complexvar	het	99.0142	98.9423	99.0862	59.4709	3087	33	3036	28	22	78.5714
ckim-gatk	INDEL	D6_15	HG002complexvar	hetalt	93.7593	91.3129	96.3403	47.3985	925	88	974	37	37	100.0000
ckim-gatk	INDEL	D6_15	HG002complexvar	homalt	99.4466	99.9145	98.9831	63.0094	1168	1	1168	12	11	91.6667
ckim-gatk	INDEL	I6_15	HG002complexvar	*	98.1470	97.2454	99.0654	57.0085	4660	132	4664	44	43	97.7273
ckim-gatk	INDEL	I6_15	HG002complexvar	het	99.3586	98.9384	99.7824	59.6346	2330	25	2293	5	4	80.0000
ckim-gatk	INDEL	I6_15	HG002complexvar	hetalt	95.4701	91.3328	100.0000	52.5604	1117	106	1158	0	0
ckim-gatk	INDEL	I6_15	HG002complexvar	homalt	98.3779	99.9176	96.8850	55.5556	1213	1	1213	39	39	100.0000
ckim-gatk	SNP	*	HG002complexvar	*	99.5695	99.1746	99.9675	19.4723	748154	6227	748002	243	101	41.5638
ckim-gatk	SNP	*	HG002complexvar	het	99.7401	99.5255	99.9558	19.1024	463288	2209	463160	205	69	33.6585
ckim-gatk	SNP	*	HG002complexvar	hetalt	98.0328	96.4516	99.6667	39.8798	299	11	299	1	1	100.0000
ckim-gatk	SNP	*	HG002complexvar	homalt	99.2945	98.6114	99.9870	20.0389	284567	4007	284543	37	31	83.7838
ckim-gatk	SNP	ti	HG002complexvar	*	99.5943	99.2243	99.9671	17.9110	504492	3944	504432	166	74	44.5783
ckim-gatk	SNP	ti	HG002complexvar	het	99.7549	99.5549	99.9557	17.5388	313365	1401	313315	139	50	35.9712
ckim-gatk	SNP	ti	HG002complexvar	hetalt	97.5369	95.6522	99.4975	39.5137	198	9	198	1	1	100.0000
ckim-gatk	SNP	ti	HG002complexvar	homalt	99.3341	98.6902	99.9864	18.4846	190929	2534	190919	26	23	88.4615
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
ckim-gatk	INDEL	I1_5	HG002complexvar	het	99.7716	99.6866	99.8566	58.0913	18132	57	18110	26	13	50.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	hetalt	92.1829	85.6895	99.7411	68.7184	1479	247	1541	4	4	100.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8588	99.9033	99.8143	52.9260	13435	13	13441	25	24	96.0000
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	*	97.6146	97.6263	97.6030	66.9174	1604	39	1588	39	28	71.7949
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	het	98.3088	98.9160	97.7090	68.8770	1095	12	853	20	10	50.0000
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	hetalt	93.2896	89.8785	96.9697	47.4403	222	25	448	14	14	100.0000
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	76.3371	287	2	287	5	4	80.0000
ckim-gatk	INDEL	D1_5	HG002complexvar	*	99.5163	99.3153	99.7181	58.5688	32491	224	32545	92	72	78.2609
ckim-gatk	INDEL	D1_5	HG002complexvar	het	99.7759	99.7111	99.8409	56.3066	20705	60	20710	33	15	45.4545
ckim-gatk	INDEL	D1_5	HG002complexvar	hetalt	92.5788	88.8314	96.6563	72.4212	1201	151	1243	43	43	100.0000
ckim-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8633	99.8773	99.8492	60.1757	10585	13	10592	16	14	87.5000
ckim-gatk	INDEL	I16_PLUS	HG002complexvar	*	98.6154	97.9374	99.3029	66.7953	1282	27	1282	9	9	100.0000
ckim-gatk	INDEL	I16_PLUS	HG002complexvar	het	99.4709	98.9474	100.0000	64.5414	658	7	634	0	0
ckim-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	96.6468	94.0299	99.4135	66.8932	315	20	339	2	2	100.0000
ckim-gatk	INDEL	I16_PLUS	HG002complexvar	homalt	98.8800	100.0000	97.7848	70.4673	309	0	309	7	7	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge