PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
53901-53950 / 86044 show all
hfeng-pmm3INDELC1_5map_l100_m1_e0het
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5map_l100_m1_e0hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5map_l100_m1_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC6_15map_l100_m1_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC6_15map_l100_m1_e0het
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC6_15map_l100_m1_e0hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC6_15map_l100_m1_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSmap_l100_m1_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSmap_l100_m1_e0het
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSmap_l100_m1_e0hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSmap_l100_m1_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELI6_15map_l100_m1_e0*
95.9276
92.9825
99.0654
86.8227
106810611
100.0000
hfeng-pmm2INDELI6_15map_l100_m1_e0het
94.7368
91.5254
98.1818
87.6957
5455411
100.0000
hfeng-pmm2INDELI6_15map_l100_m1_e0hetalt
95.2381
90.9091
100.0000
83.1933
2022000
hfeng-pmm2INDELI6_15map_l100_m1_e0homalt
98.4615
96.9697
100.0000
86.9919
3213200
hfeng-pmm2SNPtimap_l100_m1_e0*
99.5399
99.5410
99.5389
65.3094
477112204770422130
13.5747
hfeng-pmm2SNPtimap_l100_m1_e0het
99.3403
99.3387
99.3419
67.8029
297441982973719716
8.1218
hfeng-pmm2SNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
73.8739
2902900
hfeng-pmm2SNPtimap_l100_m1_e0homalt
99.8719
99.8775
99.8664
60.1447
1793822179382414
58.3333
hfeng-pmm2SNPtvmap_l100_m1_e0*
99.4801
99.5919
99.3687
67.2876
244011002439715517
10.9677
hfeng-pmm2SNPtvmap_l100_m1_e0het
99.2617
99.4357
99.0884
69.5075
15330871532614112
8.5106
hfeng-pmm2SNPtvmap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
76.9663
4104100
hfeng-pmm2SNPtvmap_l100_m1_e0homalt
99.8507
99.8562
99.8452
62.5538
9030139030145
35.7143
hfeng-pmm3INDEL*map_l100_m1_e0*
98.6300
98.2989
98.9633
82.3910
3525613532379
24.3243
hfeng-pmm3INDEL*map_l100_m1_e0het
98.5219
98.2998
98.7450
82.8675
2197382203285
17.8571
hfeng-pmm3INDEL*map_l100_m1_e0hetalt
94.0171
88.7097
100.0000
86.3804
1101411100
hfeng-pmm3INDEL*map_l100_m1_e0homalt
99.2665
99.2665
99.2665
80.9205
12189121894
44.4444
hfeng-pmm2SNP*map_l100_m1_e0*
99.5195
99.5580
99.4810
66.0017
720833207207237647
12.5000
hfeng-pmm2SNP*map_l100_m1_e0het
99.3136
99.3717
99.2555
68.4046
450742854506333828
8.2840
hfeng-pmm2SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
76.9663
4104100
hfeng-pmm2SNP*map_l100_m1_e0homalt
99.8648
99.8704
99.8593
60.9853
2696835269683819
50.0000
jli-customINDELI6_15map_l100_m1_e0*
94.9772
91.2281
99.0476
84.4214
1041010411
100.0000
jli-customINDELI6_15map_l100_m1_e0het
92.8571
88.1356
98.1132
84.9432
5275211
100.0000
jli-customINDELI6_15map_l100_m1_e0hetalt
97.6744
95.4545
100.0000
79.6117
2112100
jli-customINDELI6_15map_l100_m1_e0homalt
96.8750
93.9394
100.0000
85.8447
3123100
jli-customINDELD1_5map_l100_m1_e0*
98.6735
98.5931
98.7541
82.3788
1822261823238
34.7826
jli-customINDELD1_5map_l100_m1_e0het
98.6387
98.8420
98.4362
81.9143
1195141196195
26.3158
jli-customINDELD1_5map_l100_m1_e0hetalt
90.9091
85.1064
97.5610
91.4938
4074010
0.0000
jli-customINDELD1_5map_l100_m1_e0homalt
99.3232
99.1554
99.4915
81.9902
587558733
100.0000
jli-customINDELC1_5map_l100_m1_e0*
0.0000
0.0000
0.0000
00000
jli-customINDELC1_5map_l100_m1_e0het
0.0000
0.0000
0.0000
00000
jli-customINDELC1_5map_l100_m1_e0hetalt
0.0000
0.0000
0.0000
00000
jli-customINDELC1_5map_l100_m1_e0homalt
0.0000
0.0000
0.0000
00000
jli-customINDELD16_PLUSmap_l100_m1_e0*
91.2281
89.6552
92.8571
92.4866
7897862
33.3333
jli-customINDELD16_PLUSmap_l100_m1_e0het
92.2335
91.3043
93.1818
93.9477
4244132
66.6667
jli-customINDELD16_PLUSmap_l100_m1_e0hetalt
91.6667
84.6154
100.0000
75.7895
2242300
jli-customINDELD16_PLUSmap_l100_m1_e0homalt
87.5000
93.3333
82.3529
94.2568
1411430
0.0000
jli-customINDELI16_PLUSmap_l100_m1_e0*
89.7959
84.6154
95.6522
94.0415
2242210
0.0000
jli-customINDELI16_PLUSmap_l100_m1_e0het
88.2353
83.3333
93.7500
89.5425
1531510
0.0000
jli-customINDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
90.9091
21200