PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53501-53550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | het | 84.9313 | 74.2687 | 99.1687 | 85.9377 | 11450 | 3967 | 11452 | 96 | 19 | 19.7917 | |
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 90.3361 | 23 | 18 | 23 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | homalt | 73.0094 | 57.4920 | 100.0000 | 72.7511 | 5199 | 3844 | 5198 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.2406 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.0297 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 90.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 95.4545 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | * | 82.4562 | 70.4418 | 99.4115 | 81.1732 | 51002 | 21401 | 51014 | 302 | 83 | 27.4834 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | het | 86.2179 | 76.2737 | 99.1438 | 83.9192 | 34597 | 10762 | 34621 | 299 | 80 | 26.7559 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 90.3361 | 23 | 18 | 23 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | homalt | 75.5140 | 60.6673 | 99.9817 | 70.3269 | 16382 | 10621 | 16370 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | * | 83.2803 | 71.6572 | 99.4040 | 79.8206 | 34346 | 13585 | 34357 | 206 | 64 | 31.0680 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | het | 86.8689 | 77.3061 | 99.1314 | 82.6916 | 23147 | 6795 | 23169 | 203 | 61 | 30.0493 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | hetalt | 71.1111 | 55.1724 | 100.0000 | 88.8889 | 16 | 13 | 16 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | homalt | 76.7378 | 62.2661 | 99.9732 | 69.0460 | 11183 | 6777 | 11172 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | * | 79.6064 | 66.4675 | 99.2196 | 91.7555 | 890 | 449 | 890 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | het | 83.8279 | 72.7156 | 98.9492 | 92.4321 | 565 | 212 | 565 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.4392 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | homalt | 73.4146 | 58.1081 | 99.6689 | 88.6509 | 301 | 217 | 301 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | * | 76.7568 | 62.2807 | 100.0000 | 92.9703 | 71 | 43 | 71 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | het | 78.3505 | 64.4068 | 100.0000 | 94.3620 | 38 | 21 | 38 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 81.0811 | 68.1818 | 100.0000 | 88.8889 | 15 | 7 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 70.5882 | 54.5455 | 100.0000 | 91.0448 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | * | 86.6896 | 77.1930 | 98.8506 | 81.4894 | 88 | 26 | 86 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | het | 83.1683 | 71.1864 | 100.0000 | 81.5094 | 42 | 17 | 49 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.0000 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 81.7647 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6299 | 97.0238 | 98.2437 | 83.5797 | 1793 | 55 | 1790 | 32 | 6 | 18.7500 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | het | 97.4816 | 97.2705 | 97.6936 | 82.4440 | 1176 | 33 | 1186 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 79.4045 | 68.0851 | 95.2381 | 93.5385 | 32 | 15 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1521 | 98.8176 | 99.4889 | 84.7770 | 585 | 7 | 584 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l100_m1_e0 | * | 99.0258 | 99.1202 | 98.9317 | 67.1588 | 71766 | 637 | 71768 | 775 | 161 | 20.7742 | |
| gduggal-bwafb | SNP | * | map_l100_m1_e0 | het | 98.6881 | 99.0035 | 98.3746 | 69.4458 | 44907 | 452 | 44909 | 742 | 142 | 19.1375 | |
| gduggal-bwafb | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 76.3314 | 40 | 1 | 40 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l100_m1_e0 | homalt | 99.5971 | 99.3186 | 99.8771 | 62.3452 | 26819 | 184 | 26819 | 33 | 19 | 57.5758 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | * | 97.5776 | 96.4152 | 98.7683 | 82.4696 | 1291 | 48 | 1283 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | het | 96.7920 | 94.9807 | 98.6737 | 82.4610 | 738 | 39 | 744 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 92.7152 | 36 | 8 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3276 | 99.8069 | 98.8528 | 81.3813 | 517 | 1 | 517 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | * | 89.1165 | 82.1705 | 97.3451 | 85.2480 | 212 | 46 | 220 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | het | 92.5000 | 88.0952 | 97.3684 | 82.6879 | 111 | 15 | 148 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 79.6610 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 89.5798 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | * | 37.5000 | 23.0769 | 100.0000 | 84.2105 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | het | 36.3636 | 22.2222 | 100.0000 | 80.0000 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 87.5000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | * | 99.1029 | 99.1050 | 99.1009 | 66.4175 | 47502 | 429 | 47504 | 431 | 106 | 24.5940 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | het | 98.8099 | 98.9880 | 98.6324 | 68.7421 | 29639 | 303 | 29641 | 411 | 94 | 22.8710 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6364 | 29 | 0 | 29 | 0 | 0 | ||