PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53451-53500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | * | 95.9035 | 96.4152 | 95.3972 | 84.7728 | 1291 | 48 | 1285 | 62 | 13 | 20.9677 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | het | 95.0971 | 95.8816 | 94.3253 | 83.1025 | 745 | 32 | 748 | 45 | 6 | 13.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 91.6435 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.6564 | 99.2278 | 98.0916 | 86.1887 | 514 | 4 | 514 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | * | 97.7504 | 97.6758 | 97.8250 | 66.4350 | 46817 | 1114 | 46822 | 1041 | 456 | 43.8040 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | het | 97.3515 | 98.0162 | 96.6958 | 65.8783 | 29348 | 594 | 29352 | 1003 | 436 | 43.4696 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | homalt | 98.4338 | 97.1102 | 99.7940 | 67.2966 | 17441 | 519 | 17442 | 36 | 20 | 55.5556 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | * | 82.4716 | 70.7792 | 98.7915 | 91.7846 | 1308 | 540 | 1308 | 16 | 6 | 37.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | het | 84.4444 | 73.8627 | 98.5651 | 92.5841 | 893 | 316 | 893 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.8991 | 65.3716 | 99.4859 | 87.5000 | 387 | 205 | 387 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | * | 76.5957 | 62.7907 | 98.1818 | 93.8133 | 162 | 96 | 162 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | het | 80.0000 | 68.2540 | 96.6292 | 95.5366 | 86 | 40 | 86 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 65.3465 | 48.5294 | 100.0000 | 89.8773 | 33 | 35 | 33 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 80.3738 | 67.1875 | 100.0000 | 87.6081 | 43 | 21 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 63.5659 | 47.1264 | 97.6190 | 95.5603 | 41 | 46 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | het | 71.2329 | 56.5217 | 96.2963 | 96.3563 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 69.5652 | 53.3333 | 100.0000 | 92.8571 | 8 | 7 | 8 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | * | 98.8766 | 99.1511 | 98.6037 | 68.5198 | 24293 | 208 | 24293 | 344 | 55 | 15.9884 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | het | 98.4524 | 99.0335 | 97.8781 | 70.7160 | 15268 | 149 | 15268 | 331 | 48 | 14.5015 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 76.3314 | 40 | 1 | 40 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | homalt | 99.6065 | 99.3586 | 99.8555 | 63.7543 | 8985 | 58 | 8985 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | * | 80.3840 | 67.7078 | 98.9002 | 92.0959 | 2428 | 1158 | 2428 | 27 | 10 | 37.0370 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | het | 83.2773 | 72.0805 | 98.5924 | 92.9796 | 1611 | 624 | 1611 | 23 | 7 | 30.4348 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | hetalt | 64.1304 | 47.5806 | 98.3333 | 95.4853 | 59 | 65 | 59 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | homalt | 76.2575 | 61.7767 | 99.6058 | 88.2125 | 758 | 469 | 758 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 25.0000 | 97.5904 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.2789 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | * | 90.3615 | 92.9448 | 87.9179 | 87.2169 | 3333 | 253 | 3340 | 459 | 189 | 41.1765 | |
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | het | 89.9219 | 98.1208 | 82.9876 | 89.4070 | 2193 | 42 | 2200 | 451 | 184 | 40.7982 | |
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 1.6129 | 0.0000 | 0.0000 | 2 | 122 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | homalt | 95.9129 | 92.7465 | 99.3031 | 75.5380 | 1138 | 89 | 1140 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | * | 80.7967 | 68.0462 | 99.4275 | 83.4681 | 16672 | 7829 | 16673 | 96 | 19 | 19.7917 | |