PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | * | 97.3566 | 95.5103 | 99.2756 | 78.9689 | 3425 | 161 | 3426 | 25 | 7 | 28.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | het | 96.7206 | 94.3624 | 99.1996 | 75.5384 | 2109 | 126 | 2107 | 17 | 2 | 11.7647 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | hetalt | 91.3043 | 84.6774 | 99.0566 | 91.1148 | 105 | 19 | 105 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | homalt | 99.0600 | 98.6960 | 99.4267 | 80.9576 | 1211 | 16 | 1214 | 7 | 4 | 57.1429 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 71.9298 | 69.4915 | 74.5455 | 87.0892 | 41 | 18 | 41 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 78.0702 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | * | 98.0599 | 97.7308 | 98.3912 | 69.8054 | 70760 | 1643 | 70762 | 1157 | 328 | 28.3492 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | het | 97.3402 | 97.0590 | 97.6230 | 72.4758 | 44025 | 1334 | 44027 | 1072 | 263 | 24.5336 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 41 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | homalt | 99.3441 | 99.0075 | 99.6831 | 63.9191 | 26735 | 268 | 26735 | 85 | 65 | 76.4706 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | * | 89.2166 | 81.7563 | 98.1753 | 78.5878 | 59194 | 13209 | 59183 | 1100 | 78 | 7.0909 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | het | 92.1457 | 87.4909 | 97.3237 | 81.8820 | 39685 | 5674 | 39674 | 1091 | 69 | 6.3245 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | hetalt | 80.0000 | 68.2927 | 96.5517 | 89.6797 | 28 | 13 | 28 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.8037 | 72.1438 | 99.9590 | 65.3578 | 19481 | 7522 | 19481 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | * | 89.7569 | 82.4247 | 98.5209 | 77.3729 | 39507 | 8424 | 39500 | 593 | 63 | 10.6239 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | het | 92.5822 | 87.8732 | 97.8244 | 80.8303 | 26311 | 3631 | 26304 | 585 | 55 | 9.4017 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 82.3529 | 72.4138 | 95.4545 | 87.4286 | 21 | 8 | 21 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | homalt | 84.6124 | 73.3575 | 99.9469 | 64.1277 | 13175 | 4785 | 13175 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 94.6903 | 93.8596 | 95.5357 | 89.8274 | 107 | 7 | 107 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.9820 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.9273 | 32 | 1 | 32 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 96.9120 | 98.3766 | 95.4903 | 87.8504 | 1818 | 30 | 1821 | 86 | 8 | 9.3023 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0274 | 98.7593 | 93.4426 | 89.0578 | 1194 | 15 | 1197 | 84 | 6 | 7.1429 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.7526 | 40 | 7 | 40 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1511 | 98.6486 | 99.6587 | 83.2763 | 584 | 8 | 584 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.0606 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.5335 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.7500 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.3333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7805 | 98.5063 | 97.0653 | 87.3586 | 1319 | 20 | 1323 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 96.8346 | 98.0695 | 95.6305 | 89.6028 | 762 | 15 | 766 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.7671 | 41 | 3 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3263 | 99.6139 | 99.0403 | 80.7962 | 516 | 2 | 516 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0938 | 95.3488 | 96.8504 | 89.2962 | 246 | 12 | 246 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 96.0938 | 97.6190 | 94.6154 | 92.1734 | 123 | 3 | 123 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 74.4856 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 86.7804 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.0008 | 80.4598 | 97.1014 | 83.0882 | 70 | 17 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 91.9717 | 89.1304 | 95.0000 | 84.6743 | 41 | 5 | 38 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 85.8824 | 11 | 4 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | * | 99.3061 | 98.8274 | 99.7894 | 56.8168 | 71554 | 849 | 71550 | 151 | 36 | 23.8411 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | het | 98.9962 | 98.2804 | 99.7226 | 54.6285 | 44579 | 780 | 44576 | 124 | 12 | 9.6774 | |