PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53151-53200 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 77.5194 | 60 | 8 | 58 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.7994 | 95.3125 | 98.3333 | 76.8340 | 61 | 3 | 59 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.8904 | 92.1053 | 100.0000 | 80.2734 | 105 | 9 | 101 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | het | 95.5752 | 91.5254 | 100.0000 | 78.2427 | 54 | 5 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.0294 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 78.1022 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.1120 | 97.0874 | 99.1584 | 77.8061 | 1300 | 39 | 1296 | 11 | 1 | 9.0909 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.5190 | 96.2677 | 98.8032 | 75.9360 | 748 | 29 | 743 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.9759 | 88.6364 | 100.0000 | 93.3227 | 39 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3216 | 99.0347 | 99.6101 | 75.9719 | 513 | 5 | 511 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | * | 99.1748 | 98.6001 | 99.7563 | 54.0248 | 24158 | 343 | 24152 | 59 | 5 | 8.4746 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | het | 98.7963 | 97.9633 | 99.6436 | 50.7412 | 15103 | 314 | 15098 | 54 | 2 | 3.7037 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | hetalt | 96.2025 | 92.6829 | 100.0000 | 63.4615 | 38 | 3 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7125 | 99.9446 | 58.6136 | 9017 | 26 | 9016 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | * | 74.7799 | 65.3095 | 87.4627 | 78.8610 | 2342 | 1244 | 2344 | 336 | 264 | 78.5714 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | het | 74.2630 | 62.0134 | 92.5433 | 78.0056 | 1386 | 849 | 1390 | 112 | 68 | 60.7143 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | hetalt | 61.8722 | 45.1613 | 98.2143 | 85.2632 | 56 | 68 | 55 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | homalt | 76.5877 | 73.3496 | 80.1248 | 79.4844 | 900 | 327 | 899 | 223 | 196 | 87.8924 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | * | 99.2402 | 98.6481 | 99.8395 | 53.2325 | 47283 | 648 | 47285 | 76 | 17 | 22.3684 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | het | 98.9017 | 98.0395 | 99.7791 | 50.4672 | 29355 | 587 | 29358 | 65 | 6 | 9.2308 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | hetalt | 96.4286 | 93.1034 | 100.0000 | 61.9718 | 27 | 2 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | homalt | 99.8049 | 99.6715 | 99.9386 | 57.1476 | 17901 | 59 | 17900 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 79.7784 | 69.2308 | 94.1176 | 78.4810 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 84.6512 | 77.7778 | 92.8571 | 70.8333 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 81.2500 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | * | 99.2192 | 98.6340 | 99.8113 | 53.5259 | 71414 | 989 | 71410 | 135 | 22 | 16.2963 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | het | 98.8659 | 98.0136 | 99.7330 | 50.5607 | 44458 | 901 | 44456 | 119 | 8 | 6.7227 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | hetalt | 96.2025 | 92.6829 | 100.0000 | 63.4615 | 38 | 3 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | homalt | 99.8127 | 99.6852 | 99.9406 | 57.7080 | 26918 | 85 | 26916 | 16 | 14 | 87.5000 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | * | 98.2270 | 97.7259 | 98.7332 | 68.5176 | 46841 | 1090 | 46843 | 601 | 190 | 31.6140 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | het | 97.5455 | 97.0209 | 98.0758 | 71.2709 | 29050 | 892 | 29052 | 570 | 164 | 28.7719 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4411 | 99.0590 | 99.8261 | 62.5525 | 17791 | 169 | 17791 | 31 | 26 | 83.8710 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | map_l100_m1_e0 | * | 97.6764 | 97.6246 | 97.7283 | 72.0238 | 23919 | 582 | 23919 | 556 | 138 | 24.8201 | |
| jpowers-varprowl | SNP | tv | map_l100_m1_e0 | het | 96.9444 | 97.1330 | 96.7565 | 74.5209 | 14975 | 442 | 14975 | 502 | 99 | 19.7211 | |
| jpowers-varprowl | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 41 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l100_m1_e0 | homalt | 99.1519 | 98.9052 | 99.3999 | 66.3513 | 8944 | 99 | 8944 | 54 | 39 | 72.2222 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9404 | 91.4862 | 96.5300 | 83.1405 | 1225 | 114 | 1224 | 44 | 31 | 70.4545 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.1526 | 93.3076 | 95.0131 | 86.3196 | 725 | 52 | 724 | 38 | 26 | 68.4211 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.6562 | 96.5251 | 98.8142 | 74.0646 | 500 | 18 | 500 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 60.4651 | 50.0000 | 76.4706 | 81.9149 | 13 | 13 | 13 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 70.5882 | 66.6667 | 75.0000 | 79.7468 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 93.3333 | 1 | 4 | 1 | 0 | 0 | ||