PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53101-53150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | * | 97.0472 | 96.6450 | 97.4528 | 83.5060 | 1786 | 62 | 2219 | 58 | 35 | 60.3448 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | het | 98.2562 | 98.1803 | 98.3322 | 81.6008 | 1187 | 22 | 1415 | 24 | 8 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 48.9649 | 34.0426 | 87.1795 | 93.5323 | 16 | 31 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.4137 | 98.4797 | 96.3705 | 85.1515 | 583 | 9 | 770 | 29 | 24 | 82.7586 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.3806 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 86.8421 | 95.1157 | 0 | 0 | 33 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.2456 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.5386 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | * | 58.6912 | 47.1264 | 77.7778 | 85.7520 | 41 | 46 | 42 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | het | 75.4825 | 69.5652 | 82.5000 | 81.5668 | 32 | 14 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.3333 | 2 | 24 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 46.6667 | 58.3333 | 90.9091 | 7 | 8 | 7 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.4374 | 92.1053 | 99.0196 | 80.1556 | 105 | 9 | 101 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7049 | 91.5254 | 98.1132 | 74.6411 | 54 | 5 | 52 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.9259 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 82.3529 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | * | 95.8342 | 94.1860 | 97.5410 | 80.7723 | 243 | 15 | 238 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.0751 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.7994 | 95.3125 | 98.3333 | 81.0726 | 61 | 3 | 59 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.8563 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.0784 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.9339 | 0 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.1963 | 82.6087 | 94.5946 | 86.1423 | 38 | 8 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 87.3786 | 12 | 3 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | * | 97.7114 | 95.8874 | 99.6061 | 77.1094 | 1772 | 76 | 1770 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.0745 | 94.7064 | 99.5641 | 73.0054 | 1145 | 64 | 1142 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 89.4118 | 80.8511 | 100.0000 | 93.5201 | 38 | 9 | 37 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5779 | 99.4932 | 99.6627 | 79.8505 | 589 | 3 | 591 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9147 | 96.4899 | 99.3822 | 78.5098 | 1292 | 47 | 1287 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.2316 | 94.9807 | 99.5918 | 74.1652 | 738 | 39 | 732 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 92.8808 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3235 | 99.4208 | 99.2263 | 79.9379 | 515 | 3 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 74.3034 | 61.5385 | 93.7500 | 78.0822 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 77.4194 | 66.6667 | 92.3077 | 69.0476 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 81.2500 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.1106 | 96.9697 | 99.2786 | 76.3393 | 1792 | 56 | 1789 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.9933 | 97.0223 | 98.9839 | 74.5035 | 1173 | 36 | 1169 | 12 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 90.6977 | 82.9787 | 100.0000 | 93.6027 | 39 | 8 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.8920 | 97.9730 | 99.8285 | 75.6067 | 580 | 12 | 582 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0315 | 94.1860 | 97.9508 | 80.5112 | 243 | 15 | 239 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 82.8571 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |