PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53051-53100 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | * | 76.6064 | 62.3814 | 99.2353 | 82.7403 | 45166 | 27237 | 45158 | 348 | 14 | 4.0230 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | het | 85.1033 | 74.6313 | 98.9938 | 84.0158 | 33852 | 11507 | 33844 | 344 | 11 | 3.1977 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | homalt | 59.0007 | 41.8509 | 99.9646 | 77.1745 | 11301 | 15702 | 11301 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 86.8132 | 90.8046 | 83.1579 | 94.5371 | 79 | 8 | 79 | 16 | 4 | 25.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.0909 | 22 | 4 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 95.3086 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | * | 98.3431 | 98.3826 | 98.3037 | 85.8553 | 3528 | 58 | 3535 | 61 | 16 | 26.2295 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | het | 98.1505 | 98.3893 | 97.9130 | 86.6398 | 2199 | 36 | 2205 | 47 | 10 | 21.2766 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 86.7512 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | homalt | 99.0228 | 99.1035 | 98.9422 | 84.0369 | 1216 | 11 | 1216 | 13 | 6 | 46.1538 | |
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | * | 77.5493 | 63.5768 | 99.3932 | 81.5266 | 30473 | 17458 | 30468 | 186 | 13 | 6.9893 | |
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | het | 85.6453 | 75.3523 | 99.1953 | 82.9534 | 22562 | 7380 | 22557 | 183 | 10 | 5.4645 | |
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | hetalt | 51.2821 | 34.4828 | 100.0000 | 93.5065 | 10 | 19 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | homalt | 61.0965 | 43.9922 | 99.9620 | 75.5921 | 7901 | 10059 | 7901 | 3 | 3 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | * | 74.6989 | 60.0098 | 98.9100 | 84.8150 | 14703 | 9798 | 14700 | 162 | 1 | 0.6173 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | het | 84.0404 | 73.2308 | 98.5936 | 85.7766 | 11290 | 4127 | 11287 | 161 | 1 | 0.6211 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | homalt | 54.6448 | 37.5981 | 99.9706 | 80.1633 | 3400 | 5643 | 3400 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 95.3846 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.6667 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | * | 77.5749 | 72.0930 | 83.9590 | 83.4182 | 186 | 72 | 246 | 47 | 43 | 91.4894 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9902 | 92.8571 | 91.1392 | 82.1469 | 117 | 9 | 144 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 38.0952 | 23.5294 | 100.0000 | 84.7826 | 16 | 52 | 28 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | homalt | 75.3723 | 82.8125 | 69.1589 | 84.6705 | 53 | 11 | 74 | 33 | 30 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | het | 34.9515 | 22.2222 | 81.8182 | 64.5161 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | * | 96.2856 | 96.1165 | 96.4552 | 81.4147 | 1287 | 52 | 2068 | 76 | 58 | 76.3158 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | het | 97.0283 | 97.4260 | 96.6338 | 80.2465 | 757 | 20 | 1177 | 41 | 27 | 65.8537 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 62.8497 | 47.7273 | 92.0000 | 89.9194 | 21 | 23 | 46 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.3535 | 98.2625 | 96.4612 | 82.0271 | 509 | 9 | 845 | 31 | 28 | 90.3226 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | * | 76.4706 | 68.4211 | 86.6667 | 74.6424 | 78 | 36 | 169 | 26 | 24 | 92.3077 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | het | 79.4144 | 72.8814 | 87.2340 | 74.7312 | 43 | 16 | 82 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 64.7059 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | homalt | 77.9540 | 75.7576 | 80.2817 | 77.2436 | 25 | 8 | 57 | 14 | 14 | 100.0000 | |