PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52851-52900 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | * | 82.7225 | 90.8046 | 75.9615 | 95.2140 | 79 | 8 | 79 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | het | 80.0532 | 93.4783 | 70.0000 | 96.1710 | 43 | 3 | 42 | 18 | 2 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 77.7778 | 93.3333 | 66.6667 | 95.8580 | 14 | 1 | 14 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | * | 97.5455 | 97.9437 | 97.1505 | 85.1212 | 1810 | 38 | 1807 | 53 | 6 | 11.3208 | |
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 9.0909 | 97.3430 | 0 | 0 | 2 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 33.3333 | 99.0476 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 5.2632 | 96.2963 | 0 | 0 | 1 | 18 | 4 | 22.2222 | |
| cchapple-custom | SNP | tv | map_l100_m1_e0 | * | 97.1628 | 97.8613 | 96.4743 | 69.7586 | 23977 | 524 | 23970 | 876 | 133 | 15.1826 | |
| cchapple-custom | SNP | tv | map_l100_m1_e0 | het | 96.2530 | 98.0346 | 94.5349 | 73.9009 | 15114 | 303 | 15153 | 876 | 133 | 15.1826 | |
| cchapple-custom | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 41 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m1_e0 | homalt | 98.7629 | 97.5561 | 100.0000 | 57.4941 | 8822 | 221 | 8817 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 79.6470 | 76.1905 | 83.4320 | 87.8636 | 1408 | 440 | 1410 | 280 | 137 | 48.9286 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 79.1153 | 74.3590 | 84.5216 | 89.5868 | 899 | 310 | 901 | 165 | 39 | 23.6364 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 4.2553 | 0.0000 | 0.0000 | 2 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 83.5566 | 85.6419 | 81.5705 | 83.0803 | 507 | 85 | 509 | 115 | 98 | 85.2174 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 43.1655 | 33.3333 | 61.2245 | 89.3709 | 29 | 58 | 30 | 19 | 14 | 73.6842 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 54.4803 | 41.3043 | 80.0000 | 88.4793 | 19 | 27 | 20 | 5 | 3 | 60.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.2821 | 66.6667 | 41.6667 | 90.1639 | 10 | 5 | 10 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | * | 70.4613 | 65.9230 | 75.6705 | 87.5050 | 2364 | 1222 | 2370 | 762 | 504 | 66.1417 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | het | 72.9400 | 70.5593 | 75.4869 | 88.5098 | 1577 | 658 | 1589 | 516 | 305 | 59.1085 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 4.8387 | 0.0000 | 0.0000 | 6 | 118 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m1_e0 | homalt | 69.2990 | 63.6512 | 76.0467 | 84.7739 | 781 | 446 | 781 | 246 | 199 | 80.8943 | |
| ciseli-custom | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 98.4375 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 94.4444 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | * | 97.7073 | 97.6424 | 97.7722 | 66.9622 | 46801 | 1130 | 46783 | 1066 | 270 | 25.3283 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | het | 97.1277 | 97.7690 | 96.4947 | 71.3539 | 29274 | 668 | 29290 | 1064 | 268 | 25.1880 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 29 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | homalt | 98.6915 | 97.4276 | 99.9886 | 54.9898 | 17498 | 462 | 17493 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | * | 99.4329 | 99.4817 | 99.3842 | 68.2243 | 24374 | 127 | 24370 | 151 | 29 | 19.2053 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | het | 99.2944 | 99.5135 | 99.0763 | 71.7035 | 15342 | 75 | 15338 | 143 | 24 | 16.7832 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.6730 | 99.4360 | 99.9111 | 59.6774 | 8992 | 51 | 8992 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 98.8105 | 98.8095 | 98.8115 | 84.8192 | 1826 | 22 | 1829 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 98.6818 | 98.9247 | 98.4401 | 85.0991 | 1196 | 13 | 1199 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 90.5579 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4073 | 99.1554 | 99.6604 | 83.4225 | 587 | 5 | 587 | 2 | 2 | 100.0000 | |