PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52651-52700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 36.2903 | 0.0000 | 0.0000 | 45 | 79 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | homalt | 91.2452 | 85.0041 | 98.4754 | 75.7601 | 1043 | 184 | 1421 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | * | 95.7091 | 94.2918 | 97.1698 | 74.6083 | 45195 | 2736 | 45216 | 1317 | 683 | 51.8603 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | het | 95.4495 | 95.2475 | 95.6523 | 78.8806 | 28519 | 1423 | 28557 | 1298 | 664 | 51.1556 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | hetalt | 85.7143 | 93.1034 | 79.4118 | 79.6407 | 27 | 2 | 27 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | homalt | 96.1786 | 92.7004 | 99.9279 | 60.1160 | 16649 | 1311 | 16632 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | * | 17.3913 | 10.5263 | 50.0000 | 94.3445 | 12 | 102 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | het | 18.3007 | 11.8644 | 40.0000 | 93.4211 | 7 | 52 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 22 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.2692 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | * | 95.4122 | 93.9174 | 96.9553 | 75.8528 | 67999 | 4404 | 68019 | 2136 | 1080 | 50.5618 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | het | 95.1709 | 95.0043 | 95.3380 | 79.9679 | 43093 | 2266 | 43129 | 2109 | 1058 | 50.1660 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | homalt | 95.8529 | 92.1009 | 99.9236 | 61.4019 | 24870 | 2133 | 24854 | 19 | 14 | 73.6842 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | * | 84.9995 | 81.6845 | 88.5950 | 70.0712 | 59142 | 13261 | 58960 | 7590 | 2012 | 26.5086 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | het | 81.6533 | 76.9704 | 86.9429 | 74.2795 | 34913 | 10446 | 34838 | 5232 | 159 | 3.0390 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | homalt | 90.3629 | 89.6308 | 91.1071 | 60.1980 | 24203 | 2800 | 24096 | 2352 | 1848 | 78.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 53.8462 | 51.5504 | 56.3559 | 88.4200 | 133 | 125 | 133 | 103 | 60 | 58.2524 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 63.4344 | 65.0794 | 61.8705 | 90.0572 | 82 | 44 | 86 | 53 | 13 | 24.5283 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 4.4118 | 0.0000 | 0.0000 | 3 | 65 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 58.8727 | 75.0000 | 48.4536 | 84.8437 | 48 | 16 | 47 | 50 | 47 | 94.0000 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | * | 86.1026 | 83.0465 | 89.3922 | 69.2811 | 39805 | 8126 | 39742 | 4716 | 1317 | 27.9262 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | het | 83.0208 | 78.5018 | 88.0918 | 73.6464 | 23505 | 6437 | 23480 | 3174 | 86 | 2.7095 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | hetalt | 75.4717 | 68.9655 | 83.3333 | 68.8312 | 20 | 9 | 20 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | homalt | 90.9965 | 90.6459 | 91.3498 | 59.1340 | 16280 | 1680 | 16242 | 1538 | 1227 | 79.7789 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | * | 96.9560 | 97.3229 | 96.5919 | 86.1888 | 3490 | 96 | 3486 | 123 | 19 | 15.4472 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | het | 96.2275 | 97.0917 | 95.3785 | 87.2966 | 2170 | 65 | 2167 | 105 | 9 | 8.5714 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | hetalt | 94.4681 | 89.5161 | 100.0000 | 85.7143 | 111 | 13 | 112 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m1_e0 | homalt | 98.5318 | 98.5330 | 98.5306 | 83.5835 | 1209 | 18 | 1207 | 18 | 10 | 55.5556 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 98.7805 | 0 | 18 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 90.3226 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 63.5476 | 57.9537 | 70.3367 | 84.8997 | 776 | 563 | 773 | 326 | 278 | 85.2761 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 69.4206 | 72.4582 | 66.6275 | 85.4704 | 563 | 214 | 567 | 284 | 245 | 86.2676 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 11.3636 | 0.0000 | 0.0000 | 5 | 39 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 54.1379 | 40.1544 | 83.0645 | 82.5475 | 208 | 310 | 206 | 42 | 33 | 78.5714 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 28.7671 | 18.4211 | 65.6250 | 88.7719 | 21 | 93 | 21 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 35.8974 | 23.7288 | 73.6842 | 90.0524 | 14 | 45 | 14 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 86.1702 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | * | 82.8010 | 79.0049 | 86.9802 | 71.6783 | 19357 | 5144 | 19347 | 2896 | 701 | 24.2058 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | het | 78.9799 | 73.9962 | 84.6833 | 75.5859 | 11408 | 4009 | 11406 | 2063 | 73 | 3.5385 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | homalt | 89.0533 | 87.6147 | 90.5399 | 62.3935 | 7923 | 1120 | 7915 | 827 | 623 | 75.3325 | |