PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52501-52550 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.5769 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 86.2338 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6087 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 85.9649 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | * | 99.5814 | 99.3868 | 99.7767 | 62.8958 | 71959 | 444 | 71948 | 161 | 49 | 30.4348 | |
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | het | 99.4173 | 99.1159 | 99.7205 | 63.9471 | 44958 | 401 | 44947 | 126 | 32 | 25.3968 | |
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.8362 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | homalt | 99.8556 | 99.8408 | 99.8703 | 60.9594 | 26960 | 43 | 26960 | 35 | 17 | 48.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.7628 | 98.2823 | 99.2481 | 82.0270 | 1316 | 23 | 1320 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3748 | 97.2973 | 99.4764 | 82.8507 | 756 | 21 | 760 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.7701 | 42 | 2 | 42 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4242 | 100.0000 | 98.8550 | 79.6188 | 518 | 0 | 518 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 92.2421 | 80 | 7 | 80 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.5697 | 95.6522 | 86.0000 | 93.7578 | 44 | 2 | 43 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.8846 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 93.2836 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | * | 97.8612 | 98.9756 | 96.7717 | 72.1277 | 24250 | 251 | 24251 | 809 | 135 | 16.6873 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | het | 97.2713 | 99.3060 | 95.3184 | 75.1777 | 15310 | 107 | 15311 | 752 | 97 | 12.8989 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 41 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | homalt | 99.1131 | 98.8610 | 99.3665 | 64.2948 | 8940 | 103 | 8940 | 57 | 38 | 66.6667 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.4990 | 97.6190 | 99.3949 | 80.5561 | 1804 | 44 | 1807 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | het | 98.0780 | 97.0223 | 99.1568 | 79.7611 | 1173 | 36 | 1176 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 95.5556 | 91.4894 | 100.0000 | 90.8316 | 43 | 4 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 80.5031 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.0530 | 95.7364 | 98.4064 | 83.5733 | 247 | 11 | 247 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2332 | 97.6190 | 96.8504 | 86.2256 | 123 | 3 | 123 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 73.5043 | 62 | 6 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 83.3333 | 62 | 2 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | * | 98.1895 | 97.4902 | 98.8989 | 82.4896 | 3496 | 90 | 3503 | 39 | 9 | 23.0769 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | het | 97.8105 | 96.8680 | 98.7716 | 82.6711 | 2165 | 70 | 2171 | 27 | 4 | 14.8148 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | hetalt | 94.9153 | 90.3226 | 100.0000 | 87.1298 | 112 | 12 | 113 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | homalt | 99.1863 | 99.3480 | 99.0252 | 81.5332 | 1219 | 8 | 1219 | 12 | 5 | 41.6667 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | * | 85.3263 | 79.9784 | 91.4407 | 90.7363 | 1478 | 370 | 1720 | 161 | 32 | 19.8758 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | het | 85.1353 | 81.5550 | 89.0443 | 91.4683 | 986 | 223 | 1146 | 141 | 27 | 19.1489 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 31.2500 | 21.2766 | 58.8235 | 98.2528 | 10 | 37 | 10 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 88.8389 | 81.4189 | 97.7470 | 86.4139 | 482 | 110 | 564 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | * | 38.7543 | 25.1938 | 83.9286 | 94.2915 | 65 | 193 | 47 | 9 | 1 | 11.1111 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | het | 43.8202 | 30.9524 | 75.0000 | 93.9394 | 39 | 87 | 27 | 9 | 1 | 11.1111 | |