PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52351-52400 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | homalt | 98.8809 | 98.0895 | 99.6851 | 64.3445 | 11398 | 222 | 11398 | 36 | 21 | 58.3333 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | * | 90.5391 | 95.3650 | 86.1780 | 88.0700 | 823 | 40 | 823 | 132 | 24 | 18.1818 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.8819 | 93.4109 | 96.4000 | 79.4069 | 241 | 17 | 241 | 9 | 2 | 22.2222 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | * | 92.3781 | 89.7690 | 95.1434 | 82.0623 | 9950 | 1134 | 9952 | 508 | 276 | 54.3307 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | het | 92.3125 | 91.6921 | 92.9413 | 85.1008 | 6622 | 600 | 6623 | 503 | 271 | 53.8767 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | homalt | 92.5848 | 86.1934 | 100.0000 | 67.9954 | 3315 | 531 | 3316 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | * | 85.1994 | 91.0429 | 80.0608 | 87.9508 | 1423 | 140 | 2108 | 525 | 180 | 34.2857 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | het | 83.1200 | 94.8090 | 73.9970 | 89.3957 | 968 | 53 | 1457 | 512 | 171 | 33.3984 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 18 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | homalt | 91.5445 | 85.8546 | 98.0422 | 79.7808 | 437 | 72 | 651 | 13 | 9 | 69.2308 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | * | 93.4813 | 91.1488 | 95.9364 | 78.9527 | 19844 | 1927 | 19855 | 841 | 482 | 57.3127 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | het | 93.3645 | 92.7197 | 94.0184 | 82.6234 | 12965 | 1018 | 12983 | 826 | 467 | 56.5375 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | hetalt | 80.0000 | 85.7143 | 75.0000 | 81.3953 | 12 | 2 | 12 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | homalt | 93.7346 | 88.3329 | 99.8399 | 63.4054 | 6867 | 907 | 6860 | 11 | 11 | 100.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | * | 93.1162 | 90.6854 | 95.6808 | 80.1096 | 29782 | 3059 | 29795 | 1345 | 754 | 56.0595 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | het | 93.0063 | 92.3697 | 93.6518 | 83.5542 | 19587 | 1618 | 19606 | 1329 | 738 | 55.5305 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | homalt | 93.3571 | 87.6248 | 99.8920 | 65.0376 | 10182 | 1438 | 10176 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | * | 13.9535 | 9.0909 | 30.0000 | 94.4751 | 3 | 30 | 3 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 17 | 0 | 6 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 37.5000 | 25.0000 | 75.0000 | 89.7436 | 3 | 9 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | * | 83.4049 | 79.9263 | 87.2000 | 93.3581 | 434 | 109 | 436 | 64 | 4 | 6.2500 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | het | 82.1561 | 80.3681 | 84.0256 | 94.2956 | 262 | 64 | 263 | 50 | 2 | 4.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 51.0638 | 44.4444 | 60.0000 | 98.6226 | 4 | 5 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 86.6295 | 80.7692 | 93.4066 | 89.1538 | 168 | 40 | 170 | 12 | 1 | 8.3333 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | * | 72.5984 | 69.9029 | 75.5102 | 84.8765 | 72 | 31 | 111 | 36 | 22 | 61.1111 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | het | 79.3681 | 85.0000 | 74.4361 | 85.1064 | 51 | 9 | 99 | 34 | 20 | 58.8235 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 52.6316 | 0.0000 | 0.0000 | 10 | 9 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 59.7285 | 45.8333 | 85.7143 | 82.2785 | 11 | 13 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 37.0370 | 95.7547 | 0 | 0 | 30 | 51 | 4 | 7.8431 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 28.5714 | 95.7755 | 0 | 0 | 20 | 50 | 4 | 8.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 90.9091 | 95.6175 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |