PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52001-52050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | * | 92.0422 | 93.2039 | 90.9091 | 88.2101 | 96 | 7 | 100 | 10 | 1 | 10.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9442 | 98.3333 | 91.7808 | 88.6997 | 59 | 1 | 67 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 71.5596 | 68.4211 | 75.0000 | 82.8571 | 13 | 6 | 9 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 88.4793 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 86.7470 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 86.2069 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.0785 | 89.2857 | 81.2500 | 90.6158 | 25 | 3 | 26 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.4749 | 89.4737 | 81.8182 | 90.9836 | 17 | 2 | 18 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 75.0000 | 60.0000 | 80.0000 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | * | 97.3822 | 96.9873 | 97.7804 | 83.9188 | 837 | 26 | 837 | 19 | 6 | 31.5789 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | het | 97.2058 | 97.1235 | 97.2881 | 83.7734 | 574 | 17 | 574 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 94.4751 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 83.0013 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | * | 81.2819 | 86.2414 | 76.8618 | 75.7478 | 9559 | 1525 | 9547 | 2874 | 784 | 27.2791 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | het | 78.7491 | 90.6120 | 69.6328 | 77.9564 | 6544 | 678 | 6542 | 2853 | 767 | 26.8840 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 6 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m0_e0 | homalt | 87.5215 | 78.2371 | 99.3060 | 64.7976 | 3009 | 837 | 3005 | 21 | 17 | 80.9524 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | * | 58.1032 | 59.3002 | 56.9536 | 86.9940 | 322 | 221 | 344 | 260 | 177 | 68.0769 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | het | 47.2130 | 37.7301 | 63.0631 | 92.0173 | 123 | 203 | 140 | 82 | 10 | 12.1951 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.9183 | 93.2692 | 53.4031 | 79.4954 | 194 | 14 | 204 | 178 | 167 | 93.8202 | |
| astatham-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | map_l100_m0_e0 | * | 81.1499 | 85.0168 | 77.6195 | 74.1271 | 18509 | 3262 | 18364 | 5295 | 1408 | 26.5911 | |
| anovak-vg | SNP | ti | map_l100_m0_e0 | het | 78.0640 | 88.2071 | 70.0131 | 76.8266 | 12334 | 1649 | 12260 | 5251 | 1367 | 26.0331 | |
| anovak-vg | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 5 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m0_e0 | homalt | 88.2155 | 79.3671 | 99.2843 | 61.2798 | 6170 | 1604 | 6104 | 44 | 41 | 93.1818 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | * | 61.7886 | 57.5758 | 66.6667 | 85.3933 | 19 | 14 | 26 | 13 | 6 | 46.1538 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | het | 50.0000 | 41.1765 | 63.6364 | 87.5706 | 7 | 10 | 14 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | homalt | 72.7273 | 75.0000 | 70.5882 | 81.1111 | 9 | 3 | 12 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | * | 96.7251 | 96.2892 | 97.1649 | 87.6728 | 1505 | 58 | 1508 | 44 | 9 | 20.4545 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | het | 95.7071 | 94.9070 | 96.5209 | 88.5382 | 969 | 52 | 971 | 35 | 4 | 11.4286 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.2088 | 31 | 2 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7292 | 99.2141 | 98.2490 | 85.0971 | 505 | 4 | 505 | 9 | 5 | 55.5556 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | * | 81.2078 | 85.4511 | 77.3660 | 74.7301 | 28063 | 4778 | 27745 | 8117 | 2172 | 26.7587 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | het | 78.3081 | 89.0262 | 69.8934 | 77.2580 | 18878 | 2327 | 18693 | 8052 | 2114 | 26.2543 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 6 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l100_m0_e0 | homalt | 87.9850 | 78.9931 | 99.2870 | 62.5031 | 9179 | 2441 | 9052 | 65 | 58 | 89.2308 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 57.1429 | 94.9091 | 0 | 0 | 16 | 12 | 5 | 41.6667 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 45.4545 | 94.8598 | 0 | 0 | 10 | 12 | 5 | 41.6667 | |