PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51951-52000 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 94.3038 | 28 | 5 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m0_e0 | homalt | 82.8374 | 73.4774 | 94.9301 | 85.9563 | 374 | 135 | 543 | 29 | 6 | 20.6897 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | * | 82.6366 | 72.0228 | 96.9194 | 83.3401 | 23653 | 9188 | 23407 | 744 | 630 | 84.6774 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | het | 82.7631 | 72.8602 | 95.7815 | 86.9859 | 15450 | 5755 | 15326 | 675 | 562 | 83.2593 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 65.3061 | 72.7273 | 59.2593 | 88.7967 | 8 | 3 | 16 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 74.5902 | 87.5000 | 65.0000 | 88.2353 | 7 | 1 | 13 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.4737 | 1 | 1 | 2 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 81.2587 | 87.3786 | 75.9398 | 90.8842 | 90 | 13 | 101 | 32 | 2 | 6.2500 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1195 | 85.0000 | 74.0000 | 91.9094 | 51 | 9 | 74 | 26 | 1 | 3.8462 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 86.4629 | 91.6667 | 81.8182 | 85.2018 | 22 | 2 | 27 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 53.2753 | 57.5758 | 49.5726 | 84.7656 | 19 | 14 | 58 | 59 | 1 | 1.6949 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 87.8049 | 3 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 61.0354 | 58.3333 | 64.0000 | 82.6389 | 7 | 5 | 16 | 9 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l100_m0_e0 | * | 81.5832 | 70.3459 | 97.0931 | 83.0504 | 15315 | 6456 | 15231 | 456 | 385 | 84.4298 | |
| qzeng-custom | SNP | ti | map_l100_m0_e0 | het | 81.5587 | 70.9290 | 95.9360 | 86.8580 | 9918 | 4065 | 9891 | 419 | 349 | 83.2936 | |
| qzeng-custom | SNP | ti | map_l100_m0_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 89.8990 | 10 | 4 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m0_e0 | homalt | 81.6311 | 69.2951 | 99.3106 | 61.6670 | 5387 | 2387 | 5330 | 37 | 36 | 97.2973 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 78.8389 | 67.0350 | 95.6882 | 90.8414 | 364 | 179 | 577 | 26 | 10 | 38.4615 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 77.6186 | 65.9509 | 94.3020 | 93.0987 | 215 | 111 | 331 | 20 | 8 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.1739 | 6 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 80.6497 | 68.7500 | 97.5309 | 82.4295 | 143 | 65 | 237 | 6 | 2 | 33.3333 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | * | 84.6327 | 75.3158 | 96.5801 | 84.0828 | 8348 | 2736 | 8331 | 295 | 249 | 84.4068 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | het | 85.0006 | 76.5993 | 95.4718 | 87.4215 | 5532 | 1690 | 5524 | 262 | 216 | 82.4427 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | homalt | 83.9304 | 72.9329 | 98.8335 | 64.8615 | 2805 | 1041 | 2796 | 33 | 33 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | * | 97.7226 | 97.3768 | 98.0707 | 83.8643 | 1522 | 41 | 1525 | 30 | 4 | 13.3333 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | het | 97.3501 | 97.0617 | 97.6401 | 84.2716 | 991 | 30 | 993 | 24 | 1 | 4.1667 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 88.7273 | 30 | 3 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 93.7500 | 90.9091 | 96.7742 | 90.4321 | 30 | 3 | 30 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | het | 94.1176 | 94.1176 | 94.1176 | 91.3706 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 87.3563 | 11 | 1 | 11 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | * | 99.0308 | 98.3192 | 99.7529 | 65.5554 | 32289 | 552 | 32290 | 80 | 41 | 51.2500 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | het | 98.6808 | 97.7128 | 99.6681 | 67.9602 | 20720 | 485 | 20721 | 69 | 32 | 46.3768 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.6765 | 99.4406 | 99.9135 | 60.1441 | 11555 | 65 | 11555 | 10 | 8 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6175 | 98.5267 | 98.7085 | 84.4298 | 535 | 8 | 535 | 7 | 2 | 28.5714 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | het | 98.4568 | 97.8528 | 99.0683 | 85.7648 | 319 | 7 | 319 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.7977 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 79.8279 | 207 | 1 | 207 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||