PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5151-5200 / 86044 show all
ckim-gatkINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15func_cds*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15func_cdshet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15func_cdshetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15func_cdshomalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSfunc_cdshet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELI6_15func_cds*
97.6744
97.6744
97.6744
43.4211
4214211
100.0000
ckim-dragenINDELI6_15func_cdshet
100.0000
100.0000
100.0000
46.6667
2402400
ckim-dragenINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
25.0000
31300
ckim-dragenINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
ckim-dragenSNPtvfunc_cds*
99.3521
99.9771
98.7347
37.1039
437014370560
0.0000
ckim-dragenSNPtvfunc_cdshet
98.9383
99.9624
97.9351
42.1131
265612656560
0.0000
ckim-dragenSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
ckim-dragenSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.6781
17040170400
ckim-gatkINDEL*func_cds*
99.3314
99.7753
98.8914
54.2132
444144651
20.0000
ckim-gatkINDEL*func_cdshet
99.0826
100.0000
98.1818
63.4551
214021640
0.0000
ckim-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
50.0000
41400
ckim-gatkINDEL*func_cdshomalt
99.7792
100.0000
99.5595
39.4667
226022611
100.0000
ckim-dragenSNP*func_cds*
99.5474
99.9669
99.1313
30.5099
181446181441591
0.6289
ckim-dragenSNP*func_cdshet
99.2748
99.9642
98.5949
34.9057
111574111571591
0.6289
ckim-dragenSNP*func_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
ckim-dragenSNP*func_cdshomalt
99.9857
99.9713
100.0000
21.8438
69772697700
ckim-dragenSNPtifunc_cds*
99.6097
99.9637
99.2582
28.1352
137825137821031
0.9709
ckim-dragenSNPtifunc_cdshet
99.3804
99.9647
98.8029
32.2466
8501385011031
0.9709
ckim-dragenSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.8947
80800
ckim-dragenSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.1424
52732527300
cchapple-customINDELI6_15func_cdshet
100.0000
100.0000
100.0000
36.3636
2402800
cchapple-customINDELI6_15func_cdshetalt
0.0000
75.0000
0.0000
0.0000
31000
cchapple-customINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
33.3333
1501511
100.0000
cchapple-customSNP*func_cds*
99.7855
99.9174
99.6539
26.7611
181351518142631
1.5873
cchapple-customSNP*func_cdshet
99.6697
99.9014
99.4391
30.1424
111501111168631
1.5873
cchapple-customSNP*func_cdshetalt
0.0000
100.0000
0.0000
0.0000
100000
cchapple-customSNP*func_cdshomalt
99.9713
99.9427
100.0000
20.5695
69754697400
cchapple-customSNPtifunc_cds*
99.8586
99.9202
99.7971
24.6780
137761113774281
3.5714
cchapple-customSNPtifunc_cdshet
99.7946
99.9177
99.6718
27.6397
849778504281
3.5714
cchapple-customSNPtifunc_cdshetalt
0.0000
100.0000
0.0000
0.0000
80000
cchapple-customSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.3326
52714527000
cchapple-customINDELI1_5func_cds*
99.4429
99.4444
99.4413
30.0781
179117810
0.0000
cchapple-customINDELI1_5func_cdshet
98.3329
98.3051
98.3607
39.0000
5816010
0.0000
cchapple-customINDELI1_5func_cdshetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
24.3590
119011800
cchapple-customINDELI6_15func_cds*
97.7008
97.6744
97.7273
35.2941
4214311
100.0000
cchapple-customINDELD16_PLUSfunc_cds*
86.9565
83.3333
90.9091
75.5556
1021011
100.0000
cchapple-customINDELD16_PLUSfunc_cdshet
87.5000
87.5000
87.5000
77.7778
71711
100.0000
cchapple-customINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD16_PLUSfunc_cdshomalt
85.7143
75.0000
100.0000
66.6667
31300