PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5101-5150 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 53.3333 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 62.8205 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.7273 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | func_cds | * | 99.1781 | 100.0000 | 98.3696 | 47.7273 | 180 | 0 | 181 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | het | 97.5610 | 100.0000 | 95.2381 | 64.4068 | 59 | 0 | 60 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 56.5657 | 43 | 0 | 43 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 53.9683 | 29 | 0 | 29 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | * | 99.3671 | 98.7421 | 100.0000 | 33.7553 | 157 | 2 | 157 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 42.5676 | 85 | 0 | 85 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 17.2414 | 72 | 2 | 72 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | * | 95.2381 | 93.0233 | 97.5610 | 48.1013 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | func_cds | het | 96.4901 | 96.5517 | 96.4286 | 42.8571 | 28 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | homalt | 95.6522 | 91.6667 | 100.0000 | 54.1667 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 61.1111 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | SNP | tv | func_cds | * | 99.5776 | 99.7941 | 99.3620 | 38.5208 | 4362 | 9 | 4361 | 28 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | func_cds | het | 99.4192 | 99.8871 | 98.9556 | 44.4352 | 2654 | 3 | 2653 | 28 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | SNP | tv | func_cds | homalt | 99.8236 | 99.6479 | 100.0000 | 25.7867 | 1698 | 6 | 1698 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | * | 97.5940 | 95.7303 | 99.5316 | 35.2049 | 426 | 19 | 425 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | func_cds | het | 97.8678 | 96.7290 | 99.0338 | 42.5000 | 207 | 7 | 205 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 55.5556 | 3 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | homalt | 97.7376 | 95.5752 | 100.0000 | 25.5172 | 216 | 10 | 216 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||