PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51351-51400 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | tv | map_l100_m0_e0 | * | 98.2217 | 98.8903 | 97.5621 | 72.7546 | 10961 | 123 | 10965 | 274 | 31 | 11.3139 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | het | 97.5576 | 98.6846 | 96.4561 | 76.6502 | 7127 | 95 | 7131 | 262 | 21 | 8.0153 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m0_e0 | homalt | 99.4789 | 99.2720 | 99.6867 | 59.7308 | 3818 | 28 | 3818 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | * | map_l100_m0_e0 | * | 98.2840 | 98.9495 | 97.6275 | 70.9502 | 32496 | 345 | 32508 | 790 | 91 | 11.5190 | |
| ckim-dragen | SNP | * | map_l100_m0_e0 | het | 97.6312 | 98.8022 | 96.4876 | 75.1408 | 20951 | 254 | 20960 | 763 | 67 | 8.7811 | |
| ckim-dragen | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l100_m0_e0 | homalt | 99.4909 | 99.2169 | 99.7664 | 57.4442 | 11529 | 91 | 11532 | 27 | 24 | 88.8889 | |
| ckim-dragen | SNP | ti | map_l100_m0_e0 | * | 98.3169 | 98.9803 | 97.6623 | 69.9393 | 21549 | 222 | 21557 | 516 | 60 | 11.6279 | |
| ckim-dragen | SNP | ti | map_l100_m0_e0 | het | 97.6691 | 98.8629 | 96.5038 | 74.2830 | 13824 | 159 | 13829 | 501 | 46 | 9.1816 | |
| ckim-dragen | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m0_e0 | homalt | 99.4968 | 99.1896 | 99.8059 | 56.2121 | 7711 | 63 | 7714 | 15 | 14 | 93.3333 | |
| ckim-gatk | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8319 | 98.4005 | 93.3939 | 90.2135 | 1538 | 25 | 1541 | 109 | 10 | 9.1743 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | het | 94.5578 | 98.5309 | 90.8927 | 91.4725 | 1006 | 15 | 1008 | 101 | 5 | 4.9505 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 85.4504 | 504 | 5 | 504 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | map_l100_m0_e0 | * | 96.7025 | 96.7997 | 96.6055 | 71.5936 | 31790 | 1051 | 31789 | 1117 | 256 | 22.9185 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | het | 95.9513 | 97.0667 | 94.8612 | 75.7604 | 20583 | 622 | 20601 | 1116 | 255 | 22.8495 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 16 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m0_e0 | homalt | 98.1150 | 96.3081 | 99.9911 | 57.3704 | 11191 | 429 | 11188 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 95.6954 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.0860 | 8 | 0 | 10 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2759 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 92.4677 | 93.2039 | 91.7431 | 86.9617 | 96 | 7 | 100 | 9 | 4 | 44.4444 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 93.5871 | 96.6667 | 90.6977 | 87.0091 | 58 | 2 | 78 | 8 | 3 | 37.5000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 84.2105 | 0.0000 | 0.0000 | 16 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.6170 | 91.6667 | 95.6522 | 86.7816 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 88.7845 | 84.8485 | 93.1034 | 92.0330 | 28 | 5 | 27 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 82.2134 | 76.4706 | 88.8889 | 93.3824 | 13 | 4 | 16 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 88.0435 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 77.9661 | 82.1429 | 74.1935 | 94.2056 | 23 | 5 | 23 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 83.4019 | 84.2105 | 82.6087 | 94.8081 | 16 | 3 | 19 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 91.3043 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |