PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51251-51300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | homalt | 64.1655 | 47.2461 | 99.9635 | 77.1816 | 5490 | 6130 | 5484 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 33.3333 | 96.8421 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 33.3333 | 96.3415 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | * | 98.7063 | 98.7333 | 98.6792 | 70.9309 | 32425 | 416 | 32426 | 434 | 107 | 24.6544 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | het | 98.3117 | 98.5852 | 98.0398 | 73.2020 | 20905 | 300 | 20906 | 418 | 97 | 23.2057 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | homalt | 99.4296 | 99.0017 | 99.8611 | 65.4925 | 11504 | 116 | 11504 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3901 | 96.3168 | 98.4877 | 84.2137 | 523 | 20 | 521 | 8 | 2 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2284 | 93.8650 | 98.7138 | 84.8956 | 306 | 20 | 307 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1220 | 9 | 0 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 81.8648 | 208 | 0 | 208 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | * | 97.6164 | 97.3349 | 97.8996 | 85.1319 | 840 | 23 | 839 | 18 | 1 | 5.5556 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | het | 97.1284 | 97.1235 | 97.1332 | 84.0205 | 574 | 17 | 576 | 17 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.9394 | 11 | 3 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2218 | 98.8372 | 99.6094 | 86.6736 | 255 | 3 | 255 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | * | 53.3333 | 36.3636 | 100.0000 | 83.3333 | 4 | 7 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 66.6667 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | * | 98.8483 | 98.7506 | 98.9461 | 70.2347 | 21499 | 272 | 21500 | 229 | 69 | 30.1310 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | het | 98.5173 | 98.5983 | 98.4365 | 72.6281 | 13787 | 196 | 13788 | 219 | 63 | 28.7671 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.2712 | 14 | 0 | 14 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | homalt | 99.4445 | 99.0224 | 99.8703 | 64.5919 | 7698 | 76 | 7698 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | het | 92.7976 | 90.0000 | 95.7746 | 84.8614 | 54 | 6 | 68 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 84.8485 | 73.6842 | 100.0000 | 82.6087 | 14 | 5 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.8333 | 95.8333 | 95.8333 | 92.5466 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | * | 84.7458 | 75.7576 | 96.1538 | 87.0000 | 25 | 8 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | het | 78.5714 | 64.7059 | 100.0000 | 88.3929 | 11 | 6 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.3077 | 3 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 84.0000 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | * | 60.0000 | 42.8571 | 100.0000 | 97.6967 | 12 | 16 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | het | 59.2593 | 42.1053 | 100.0000 | 98.1043 | 8 | 11 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.7447 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.1538 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | * | 98.4300 | 98.7008 | 98.1606 | 72.2063 | 10940 | 144 | 10940 | 205 | 38 | 18.5366 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | het | 97.9160 | 98.5600 | 97.2803 | 74.2359 | 7118 | 104 | 7118 | 199 | 34 | 17.0854 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | homalt | 99.3993 | 98.9600 | 99.8426 | 67.1804 | 3806 | 40 | 3806 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | * | 73.0645 | 57.9655 | 98.8004 | 94.3818 | 906 | 657 | 906 | 11 | 2 | 18.1818 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | het | 75.7831 | 61.6063 | 98.4351 | 95.0187 | 629 | 392 | 629 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | hetalt | 68.0000 | 51.5152 | 100.0000 | 97.2447 | 17 | 16 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | homalt | 67.5325 | 51.0806 | 99.6169 | 90.9281 | 260 | 249 | 260 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | * | 72.3926 | 57.2816 | 98.3333 | 96.0186 | 59 | 44 | 59 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | het | 74.2268 | 60.0000 | 97.2973 | 96.7965 | 36 | 24 | 36 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 68.9655 | 52.6316 | 100.0000 | 94.0828 | 10 | 9 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 70.2703 | 54.1667 | 100.0000 | 92.8962 | 13 | 11 | 13 | 0 | 0 | ||