PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51101-51150 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6228 | 98.7109 | 98.5348 | 85.9278 | 536 | 7 | 538 | 8 | 3 | 37.5000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 98.4653 | 98.1595 | 98.7730 | 87.5096 | 320 | 6 | 322 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1935 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 81.0762 | 207 | 1 | 207 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1515 | 98.3778 | 97.9263 | 86.5655 | 849 | 14 | 850 | 18 | 4 | 22.2222 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9819 | 98.4772 | 97.4916 | 87.0169 | 582 | 9 | 583 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 93.6275 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0291 | 98.8372 | 99.2218 | 84.4337 | 255 | 3 | 255 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 96.4578 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 95.1351 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.2558 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | map_l100_m0_e0 | * | 99.2175 | 99.2266 | 99.2084 | 71.3904 | 32587 | 254 | 32583 | 260 | 57 | 21.9231 | |
| dgrover-gatk | SNP | * | map_l100_m0_e0 | het | 99.0469 | 99.2549 | 98.8398 | 75.0691 | 21047 | 158 | 21043 | 247 | 48 | 19.4332 | |
| dgrover-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m0_e0 | homalt | 99.5293 | 99.1738 | 99.8873 | 60.6890 | 11524 | 96 | 11524 | 13 | 9 | 69.2308 | |
| dgrover-gatk | SNP | ti | map_l100_m0_e0 | * | 99.2854 | 99.2467 | 99.3242 | 70.6721 | 21607 | 164 | 21604 | 147 | 34 | 23.1293 | |
| dgrover-gatk | SNP | ti | map_l100_m0_e0 | het | 99.1285 | 99.2491 | 99.0081 | 74.4536 | 13878 | 105 | 13875 | 139 | 28 | 20.1439 | |
| dgrover-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.0000 | 14 | 0 | 14 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l100_m0_e0 | homalt | 99.5677 | 99.2411 | 99.8964 | 59.9180 | 7715 | 59 | 7715 | 8 | 6 | 75.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 90.4324 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 91.5323 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 81.7308 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.7950 | 22 | 2 | 22 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | * | 99.0852 | 99.1880 | 98.9825 | 72.6937 | 10994 | 90 | 10993 | 113 | 23 | 20.3540 | |
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | het | 98.8895 | 99.2661 | 98.5157 | 76.1747 | 7169 | 53 | 7168 | 108 | 20 | 18.5185 | |
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | homalt | 99.4517 | 99.0380 | 99.8689 | 62.1627 | 3809 | 37 | 3809 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | * | 96.1232 | 99.6842 | 92.8078 | 73.2654 | 11049 | 35 | 11007 | 853 | 14 | 1.6413 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | het | 94.2875 | 99.6677 | 89.4585 | 75.0937 | 7198 | 24 | 7137 | 841 | 11 | 1.3080 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 74.1036 | 16 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | homalt | 99.7129 | 99.7140 | 99.7118 | 68.3997 | 3835 | 11 | 3806 | 11 | 3 | 27.2727 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | * | 99.1630 | 99.6279 | 98.7023 | 71.7657 | 21690 | 81 | 21373 | 281 | 15 | 5.3381 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | het | 98.7795 | 99.5137 | 98.0561 | 74.4857 | 13915 | 68 | 13670 | 271 | 10 | 3.6900 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8705 | 14 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | homalt | 99.8506 | 99.8328 | 99.8684 | 64.9624 | 7761 | 13 | 7590 | 10 | 5 | 50.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | * | 96.4693 | 95.1376 | 97.8389 | 85.1430 | 1487 | 76 | 1494 | 33 | 7 | 21.2121 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | het | 95.7880 | 94.1234 | 97.5124 | 84.4692 | 961 | 60 | 980 | 25 | 1 | 4.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 94.4444 | 24 | 9 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 85.7978 | 502 | 7 | 502 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.3404 | 60.7143 | 89.4737 | 90.1042 | 17 | 11 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 86.4078 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.2529 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | * | 98.1181 | 99.6468 | 96.6356 | 72.2026 | 32725 | 116 | 31854 | 1109 | 29 | 2.6150 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | het | 97.2093 | 99.5661 | 94.9614 | 74.6186 | 21113 | 92 | 20524 | 1089 | 21 | 1.9284 | |