PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51001-51050 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 80.6452 | 89.2857 | 73.5294 | 96.2842 | 25 | 3 | 25 | 9 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.2995 | 89.4737 | 76.1905 | 96.8278 | 17 | 2 | 16 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.7407 | 4 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.9799 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | * | 97.7081 | 98.0806 | 97.3384 | 87.7968 | 1533 | 30 | 1536 | 42 | 9 | 21.4286 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | het | 97.5662 | 98.0411 | 97.0958 | 88.5957 | 1001 | 20 | 1003 | 30 | 4 | 13.3333 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 95.4305 | 93.9394 | 96.9697 | 91.1051 | 31 | 2 | 32 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.1391 | 98.4283 | 97.8516 | 85.3798 | 501 | 8 | 501 | 11 | 5 | 45.4545 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | * | 70.1414 | 54.3558 | 98.8482 | 87.4638 | 17851 | 14990 | 17850 | 208 | 2 | 0.9615 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | het | 80.5244 | 68.0594 | 98.5791 | 88.0545 | 14432 | 6773 | 14431 | 208 | 2 | 0.9615 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m0_e0 | homalt | 45.4479 | 29.4062 | 100.0000 | 84.0267 | 3417 | 8203 | 3417 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | * | 69.0592 | 53.2118 | 98.3492 | 88.9281 | 5898 | 5186 | 5898 | 99 | 1 | 1.0101 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | het | 79.8556 | 67.3775 | 98.0060 | 89.3473 | 4866 | 2356 | 4866 | 99 | 1 | 1.0101 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | homalt | 42.2477 | 26.7811 | 100.0000 | 86.1726 | 1030 | 2816 | 1030 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | * | 70.6665 | 54.9125 | 99.0964 | 86.5903 | 11955 | 9816 | 11954 | 109 | 1 | 0.9174 | |
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | het | 80.8690 | 68.4116 | 98.8733 | 87.2610 | 9566 | 4417 | 9565 | 109 | 1 | 0.9174 | |
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 97.2973 | 2 | 12 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | homalt | 46.9836 | 30.7049 | 100.0000 | 82.8803 | 2387 | 5387 | 2387 | 0 | 0 | ||
| dgrover-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | * | 97.7243 | 97.7901 | 97.6585 | 83.5553 | 531 | 12 | 1001 | 24 | 17 | 70.8333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | het | 97.5785 | 97.5460 | 97.6109 | 82.4235 | 318 | 8 | 572 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 85.5305 | 77.7778 | 95.0000 | 91.5966 | 7 | 2 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.4417 | 99.0385 | 97.8520 | 84.2540 | 206 | 2 | 410 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | het | 81.4747 | 76.4706 | 87.1795 | 78.5714 | 13 | 4 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 68.8889 | 2 | 2 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | homalt | 87.7193 | 83.3333 | 92.5926 | 82.0000 | 10 | 2 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | * | 81.4941 | 77.6699 | 85.7143 | 87.9676 | 80 | 23 | 102 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | het | 91.4037 | 93.3333 | 89.5522 | 86.6534 | 56 | 4 | 60 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 41.6667 | 26.3158 | 100.0000 | 86.7925 | 5 | 14 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | homalt | 76.3271 | 79.1667 | 73.6842 | 90.0262 | 19 | 5 | 28 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | * | 51.3761 | 36.3636 | 87.5000 | 70.3704 | 4 | 7 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 64.2857 | 3 | 5 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 76.9231 | 1 | 1 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 90.6250 | 96.3387 | 0 | 0 | 29 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 82.3529 | 96.3830 | 0 | 0 | 14 | 3 | 1 | 33.3333 | |