PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5051-5100 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | homalt | 89.6552 | 86.6667 | 92.8571 | 39.1304 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | func_cds | * | 99.6673 | 99.9492 | 99.3869 | 27.6810 | 13780 | 7 | 13780 | 85 | 2 | 2.3529 | |
| gduggal-bwafb | SNP | ti | func_cds | het | 99.4792 | 99.9530 | 99.0099 | 30.9221 | 8500 | 4 | 8500 | 85 | 2 | 2.3529 | |
| gduggal-bwafb | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | func_cds | homalt | 99.9716 | 99.9431 | 100.0000 | 21.6059 | 5272 | 3 | 5272 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | func_cds | * | 99.4763 | 99.9542 | 99.0029 | 37.0021 | 4369 | 2 | 4369 | 44 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | func_cds | het | 99.1412 | 99.9247 | 98.3698 | 41.4914 | 2655 | 2 | 2655 | 44 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.0101 | 1704 | 0 | 1704 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | func_cds | * | 99.6211 | 99.9504 | 99.2939 | 30.1552 | 18141 | 9 | 18141 | 129 | 2 | 1.5504 | |
| gduggal-bwafb | SNP | * | func_cds | het | 99.3985 | 99.9462 | 98.8568 | 33.7832 | 11155 | 6 | 11155 | 129 | 2 | 1.5504 | |
| gduggal-bwafb | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | func_cds | homalt | 99.9785 | 99.9570 | 100.0000 | 23.2732 | 6976 | 3 | 6976 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | func_cds | * | 98.7421 | 98.7421 | 98.7421 | 37.1542 | 157 | 2 | 157 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | het | 98.8372 | 100.0000 | 97.7011 | 43.1373 | 85 | 0 | 85 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 27.2727 | 72 | 2 | 72 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | het | 61.5385 | 44.4444 | 100.0000 | 33.3333 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | func_cds | * | 98.6072 | 98.3333 | 98.8827 | 35.1449 | 177 | 3 | 177 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | het | 97.5336 | 98.3051 | 96.7742 | 42.0561 | 58 | 1 | 60 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 2 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I1_5 | func_cds | homalt | 99.1525 | 98.3193 | 100.0000 | 30.3571 | 117 | 2 | 117 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | func_cds | * | 90.0000 | 83.7209 | 97.2973 | 35.0877 | 36 | 7 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | het | 90.9091 | 83.3333 | 100.0000 | 40.0000 | 20 | 4 | 21 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | func_cds | hetalt | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | homalt | 96.5517 | 93.3333 | 100.0000 | 26.3158 | 14 | 1 | 14 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 51.8072 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-gatk | SNP | * | func_cds | * | 99.6618 | 99.8678 | 99.4567 | 31.5863 | 18126 | 24 | 18123 | 99 | 1 | 1.0101 | |
| ckim-gatk | SNP | * | func_cds | het | 99.5225 | 99.9283 | 99.1199 | 36.5539 | 11153 | 8 | 11150 | 99 | 1 | 1.0101 | |
| ckim-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | SNP | * | func_cds | homalt | 99.8852 | 99.7707 | 100.0000 | 21.5790 | 6963 | 16 | 6963 | 0 | 0 | ||
| ckim-gatk | SNP | ti | func_cds | * | 99.6887 | 99.8912 | 99.4870 | 29.0714 | 13772 | 15 | 13770 | 71 | 1 | 1.4085 | |
| ckim-gatk | SNP | ti | func_cds | het | 99.5548 | 99.9412 | 99.1713 | 33.6071 | 8499 | 5 | 8497 | 71 | 1 | 1.4085 | |
| ckim-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | SNP | ti | func_cds | homalt | 99.9051 | 99.8104 | 100.0000 | 20.1183 | 5265 | 10 | 5265 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.4545 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||