PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50851-50900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 94.2857 | 28 | 5 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | homalt | 98.5147 | 97.8389 | 99.2000 | 76.5368 | 498 | 11 | 496 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | * | 98.9181 | 98.0616 | 99.7897 | 58.0234 | 21349 | 422 | 21353 | 45 | 17 | 37.7778 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | het | 98.4715 | 97.2109 | 99.7652 | 55.6290 | 13593 | 390 | 13597 | 32 | 4 | 12.5000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.1111 | 14 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | homalt | 99.7102 | 99.5884 | 99.8324 | 61.6545 | 7742 | 32 | 7742 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | * | 98.8489 | 98.0061 | 99.7063 | 58.4119 | 10863 | 221 | 10862 | 32 | 6 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | het | 98.3382 | 97.0922 | 99.6165 | 55.2134 | 7012 | 210 | 7013 | 27 | 4 | 14.8148 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | homalt | 99.7918 | 99.7140 | 99.8697 | 63.2094 | 3835 | 11 | 3833 | 5 | 2 | 40.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.5078 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.0769 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.7742 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.0874 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.3843 | 82.1429 | 95.6522 | 87.8307 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 88.7246 | 84.2105 | 93.7500 | 87.4016 | 16 | 3 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 86.3636 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 90.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.4441 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 97.8102 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5806 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.1940 | 78.5714 | 95.4545 | 89.0000 | 22 | 6 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.1670 | 73.6842 | 92.8571 | 88.7097 | 14 | 5 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 86.9565 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2714 | 95.0174 | 99.6350 | 76.9941 | 820 | 43 | 819 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3290 | 93.2318 | 99.6390 | 71.5167 | 551 | 40 | 552 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.6522 | 12 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.6116 | 99.6124 | 99.6109 | 81.3091 | 257 | 1 | 256 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | * | 94.5605 | 94.1748 | 94.9495 | 84.3106 | 97 | 6 | 94 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.4828 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 86.4706 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 66.6667 | 54.5455 | 85.7143 | 78.1250 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 71.4286 | 62.5000 | 83.3333 | 62.5000 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||