PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50801-50850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | * | 67.1440 | 61.1650 | 74.4186 | 83.6190 | 63 | 40 | 64 | 22 | 14 | 63.6364 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | het | 65.7317 | 61.6667 | 70.3704 | 79.5455 | 37 | 23 | 38 | 16 | 9 | 56.2500 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 52.6316 | 90.9091 | 71.7949 | 10 | 9 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | homalt | 71.1111 | 66.6667 | 76.1905 | 90.5405 | 16 | 8 | 16 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | * | 68.2636 | 57.4739 | 84.0407 | 76.2404 | 496 | 367 | 495 | 94 | 78 | 82.9787 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | het | 66.7367 | 51.2690 | 95.5696 | 76.0968 | 303 | 288 | 302 | 14 | 4 | 28.5714 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.4110 | 7 | 7 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.9924 | 72.0930 | 69.9248 | 75.4613 | 186 | 72 | 186 | 80 | 74 | 92.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.3039 | 20 | 8 | 20 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.0513 | 84.2105 | 80.0000 | 97.7778 | 16 | 3 | 16 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 99.2233 | 4 | 1 | 4 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | * | 81.7650 | 70.7957 | 96.7567 | 85.8314 | 7847 | 3237 | 7846 | 263 | 11 | 4.1825 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | het | 84.7992 | 76.2808 | 95.4593 | 88.1483 | 5509 | 1713 | 5508 | 262 | 10 | 3.8168 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 93.2331 | 9 | 7 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | homalt | 75.4210 | 60.5564 | 99.9571 | 72.3081 | 2329 | 1517 | 2329 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | * | 92.1981 | 91.1068 | 93.3159 | 87.0820 | 1424 | 139 | 1424 | 102 | 64 | 62.7451 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | het | 92.1663 | 93.3399 | 91.0220 | 88.6047 | 953 | 68 | 953 | 94 | 59 | 62.7660 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 33 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 95.3441 | 92.5344 | 98.3299 | 81.7524 | 471 | 38 | 471 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 72.3618 | 69.9029 | 75.0000 | 88.7588 | 72 | 31 | 72 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1367 | 91.6667 | 69.6203 | 89.0733 | 55 | 5 | 55 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | homalt | 82.9268 | 70.8333 | 100.0000 | 87.0229 | 17 | 7 | 17 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | * | 93.8918 | 93.5110 | 94.2757 | 85.2184 | 807 | 56 | 807 | 49 | 23 | 46.9388 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 94.2548 | 95.7699 | 92.7869 | 86.8336 | 566 | 25 | 566 | 44 | 21 | 47.7273 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 95.6349 | 93.4109 | 97.9675 | 78.7565 | 241 | 17 | 241 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | * | 98.8943 | 98.0421 | 99.7614 | 58.2016 | 32198 | 643 | 32201 | 77 | 23 | 29.8701 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | het | 98.4261 | 97.1705 | 99.7145 | 55.4883 | 20605 | 600 | 20610 | 59 | 8 | 13.5593 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | homalt | 99.7372 | 99.6299 | 99.8447 | 62.2918 | 11577 | 43 | 11575 | 18 | 15 | 83.3333 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | * | 97.1053 | 95.5214 | 98.7426 | 78.1490 | 1493 | 70 | 1492 | 19 | 2 | 10.5263 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | het | 96.5544 | 94.7111 | 98.4709 | 76.6706 | 967 | 54 | 966 | 15 | 0 | 0.0000 | |