PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4951-5000 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 9 | 3 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | * | 78.5714 | 91.6667 | 68.7500 | 74.1935 | 11 | 1 | 11 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | het | 76.1905 | 100.0000 | 61.5385 | 77.1930 | 8 | 0 | 8 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | * | 72.7273 | 66.6667 | 80.0000 | 52.3810 | 8 | 4 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C1_5 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | func_cds | * | 98.2084 | 99.9669 | 96.5106 | 26.4105 | 18144 | 6 | 17950 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | func_cds | het | 97.1259 | 99.9642 | 94.4444 | 28.6508 | 11157 | 4 | 11033 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.9545 | 10 | 0 | 37 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 21.9335 | 6977 | 2 | 6880 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | * | 94.7737 | 99.9771 | 90.0850 | 32.1750 | 4370 | 1 | 4343 | 478 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | func_cds | het | 91.6856 | 99.9624 | 84.6746 | 34.5435 | 2656 | 1 | 2641 | 478 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.8571 | 10 | 0 | 18 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.3664 | 1704 | 0 | 1684 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | func_cds | * | 95.8862 | 94.1573 | 97.6798 | 38.6040 | 419 | 26 | 421 | 10 | 8 | 80.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | het | 94.3524 | 92.9907 | 95.7547 | 43.4667 | 199 | 15 | 203 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | homalt | 97.9684 | 96.0177 | 100.0000 | 32.8173 | 217 | 9 | 217 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | ti | func_cds | * | 99.2850 | 99.9637 | 98.6154 | 24.7463 | 13782 | 5 | 13675 | 192 | 1 | 0.5208 | |
| eyeh-varpipe | SNP | ti | func_cds | het | 98.8564 | 99.9647 | 97.7724 | 26.7528 | 8501 | 3 | 8427 | 192 | 1 | 0.5208 | |
| eyeh-varpipe | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 8 | 0 | 33 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | func_cds | homalt | 99.9810 | 99.9621 | 100.0000 | 20.7688 | 5273 | 2 | 5215 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | * | 91.1392 | 83.7209 | 100.0000 | 64.3564 | 36 | 7 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | het | 94.5455 | 89.6552 | 100.0000 | 62.8571 | 26 | 3 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 68.0000 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | * | 58.8235 | 41.6667 | 100.0000 | 72.2222 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | het | 50.0000 | 33.3333 | 100.0000 | 70.0000 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | * | 76.1905 | 66.6667 | 88.8889 | 75.6757 | 8 | 4 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 2 | 2 | 2 | 0 | 0 | ||