PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 6 7 8 9 10 11 12 13 14 ... 1720 1721 » 451-500 / 86044 show all
ckim-isaac	INDEL	I1_5	*	hetalt	89.8867	82.5636	98.6351	45.1097	9243	1952	9178	127	112	88.1890
ckim-isaac	INDEL	I1_5	*	homalt	96.6849	93.9498	99.5841	48.5995	56772	3656	56743	237	135	56.9620
ckim-isaac	INDEL	I6_15	*	*	86.2978	78.9268	95.1875	41.9911	19592	5231	19601	991	727	73.3602
ckim-isaac	INDEL	I6_15	*	het	88.7567	85.9065	91.8024	48.2080	8619	1414	8623	770	554	71.9481
ckim-isaac	INDEL	I6_15	*	hetalt	81.9509	69.9567	98.9089	28.8855	5982	2569	5983	66	52	78.7879
ckim-isaac	INDEL	I6_15	*	homalt	87.6777	79.9968	96.9903	41.8473	4991	1248	4995	155	121	78.0645
ckim-isaac	SNP	*	*	*	98.5357	97.1616	99.9494	15.9907	2967930	86704	2968584	1504	880	58.5106
ckim-isaac	SNP	*	*	het	98.6547	97.3796	99.9637	16.8583	1824505	49096	1825101	663	63	9.5023
ckim-isaac	SNP	*	*	hetalt	96.5558	93.3410	100.0000	30.0946	813	58	813	0	0
ckim-isaac	SNP	*	*	homalt	98.3805	96.8182	99.9940	14.4545	1142612	37550	1142668	69	50	72.4638
ckim-isaac	SNP	ti	*	*	98.6272	97.3318	99.9576	14.8667	2029873	55645	2030218	862	462	53.5963
ckim-isaac	SNP	ti	*	het	98.7325	97.5284	99.9667	15.6908	1250214	31683	1250525	417	31	7.4341
ckim-isaac	SNP	ti	*	hetalt	96.1641	92.6117	100.0000	30.2717	539	43	539	0	0
ckim-isaac	SNP	ti	*	homalt	98.4855	97.0214	99.9944	13.4256	779120	23919	779153	44	32	72.7273
ckim-isaac	SNP	tv	*	*	98.3371	96.7926	99.9317	18.3312	938596	31102	938905	642	418	65.1090
ckim-isaac	SNP	tv	*	het	98.4858	97.0571	99.9572	19.2906	574291	17413	574576	246	32	13.0081
ckim-isaac	SNP	tv	*	hetalt	96.5558	93.3410	100.0000	30.0946	813	58	813	0	0
ckim-isaac	SNP	tv	*	homalt	98.1562	96.3855	99.9931	16.5795	363492	13631	363515	25	18	72.0000
ckim-vqsr	INDEL	*	*	*	99.2541	99.0614	99.4476	60.7768	341308	3234	341167	1895	1532	80.8443
ckim-vqsr	INDEL	*	*	het	99.5204	99.5086	99.5323	62.3713	193179	954	192796	906	561	61.9205
ckim-vqsr	INDEL	*	*	hetalt	95.4941	91.6313	99.6969	55.9167	23125	2112	23354	71	70	98.5915
ckim-vqsr	INDEL	*	*	homalt	99.5675	99.8658	99.2711	58.9429	125004	168	125017	918	901	98.1481
ckim-vqsr	INDEL	C16_PLUS	*	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	*	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	*	*	0.0000	90.0000	0.0000	0.0000	9	1	0	0	0
ckim-vqsr	INDEL	C1_5	*	het	0.0000	88.8889	0.0000	0.0000	8	1	0	0	0
ckim-vqsr	INDEL	C1_5	*	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
ckim-vqsr	INDEL	C1_5	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	*	*	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
ckim-vqsr	INDEL	C6_15	*	het	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
ckim-vqsr	INDEL	C6_15	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	*	*	97.9266	97.9363	97.9170	71.5505	6644	140	6628	141	105	74.4681
ckim-vqsr	INDEL	D16_PLUS	*	het	97.9651	99.2719	96.6923	79.4267	3136	23	2894	99	69	69.6970
ckim-vqsr	INDEL	D16_PLUS	*	hetalt	96.6957	94.2059	99.3207	38.1824	1821	112	2047	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714
ckim-vqsr	INDEL	D1_5	*	*	99.5124	99.3485	99.6767	61.5493	145789	956	145843	473	318	67.2304
ckim-vqsr	INDEL	D1_5	*	het	99.6940	99.6963	99.6917	60.8657	87308	266	87313	270	118	43.7037
ckim-vqsr	INDEL	D1_5	*	hetalt	96.5103	93.6457	99.5557	62.7258	9594	651	9636	43	43	100.0000
ckim-vqsr	INDEL	D1_5	*	homalt	99.7969	99.9203	99.6738	62.4858	48887	39	48894	160	157	98.1250
ckim-vqsr	INDEL	D6_15	*	*	98.2389	97.9189	98.5610	55.8987	25549	543	25548	373	340	91.1528
ckim-vqsr	INDEL	D6_15	*	het	98.8252	99.3703	98.2861	64.1967	11519	73	11469	200	170	85.0000
ckim-vqsr	INDEL	D6_15	*	hetalt	96.8555	94.3479	99.5000	32.9551	7712	462	7761	39	39	100.0000
ckim-vqsr	INDEL	D6_15	*	homalt	98.8887	99.8735	97.9231	55.6564	6318	8	6318	134	131	97.7612
ckim-vqsr	INDEL	I16_PLUS	*	*	97.2630	96.1267	98.4265	70.8795	6130	247	6130	98	83	84.6939
ckim-vqsr	INDEL	I16_PLUS	*	het	98.1949	97.2774	99.1298	76.5400	2644	74	2620	23	10	43.4783
ckim-vqsr	INDEL	I16_PLUS	*	hetalt	95.6650	91.9924	99.6430	54.9403	1930	168	1954	7	6	85.7143
ckim-vqsr	INDEL	I16_PLUS	*	homalt	97.7080	99.6797	95.8128	71.8495	1556	5	1556	68	67	98.5294

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge