PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
49901-49950 / 86044 show all
mlin-fermikitINDELD16_PLUSmap_l125_m0_e0homalt
26.6667
100.0000
15.3846
92.8177
202112
18.1818
mlin-fermikitINDELD16_PLUSmap_l250_m1_e0*
50.0000
50.0000
50.0000
95.7895
22220
0.0000
mlin-fermikitINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9287
20200
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1667
20222
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
99.3534
20211
100.0000
qzeng-customINDELI6_15map_l250_m0_e0homalt
0.0000
0.0000
100.0000
95.4545
01200
qzeng-customINDELI6_15map_l250_m2_e0hetalt
0.0000
0.0000
100.0000
94.1176
00200
qzeng-customINDELI6_15map_l250_m2_e1hetalt
0.0000
0.0000
100.0000
94.1176
00200
qzeng-customINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
60.0000
30200
qzeng-customINDELI6_15tech_badpromotershomalt
66.6667
66.6667
66.6667
57.1429
21211
100.0000
qzeng-customSNP*decoy*
0.0000
0.0000
100.0000
99.9992
00200
qzeng-customSNP*decoyhomalt
0.0000
0.0000
100.0000
99.9952
00200
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
20200
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
qzeng-customSNP*map_l150_m0_e0hetalt
80.0000
66.6667
100.0000
98.0392
21200
qzeng-customSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNP*map_l250_m2_e1hetalt
57.1429
40.0000
100.0000
98.3871
23200
qzeng-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00200
qzeng-customSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9922
00200
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
qzeng-customSNPtimap_l150_m0_e0hetalt
80.0000
66.6667
100.0000
96.8750
21200
qzeng-customSNPtimap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
97.3333
23200
qzeng-customSNPtimap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
97.3684
23200
qzeng-customSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0868
20200
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
20200
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
qzeng-customSNPtvmap_l150_m0_e0hetalt
80.0000
66.6667
100.0000
98.0392
21200
qzeng-customSNPtvmap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNPtvmap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
98.3871
23200
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
97.9167
21200
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
66.6667
98.0263
00211
100.0000
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.6377
10200
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
100.0000
98.6667
00200
ltrigg-rtg2INDELC6_15segduphetalt
0.0000
0.0000
100.0000
97.4359
00200
ltrigg-rtg2INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
96.9697
20200
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1014
10200
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.0588
10200
ltrigg-rtg2INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
91.3043
20200
ltrigg-rtg2INDELD16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
91.3043
21200
ltrigg-rtg2INDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
ltrigg-rtg2INDELD16_PLUSmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
92.0000
22200
ltrigg-rtg2INDELD16_PLUSmap_l250_m1_e0het
80.0000
66.6667
100.0000
95.5556
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0het
80.0000
66.6667
100.0000
96.2963
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1het
80.0000
66.6667
100.0000
96.4286
21200
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2857
20200
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2806
20200
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9981
10200
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9884
10200
ltrigg-rtg2INDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
98.6111
20200