PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49501-49550 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4848 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5208 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.7742 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0952 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.9021 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.8102 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 97.7827 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.8042 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 93.0233 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 90.0000 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 95.7447 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8254 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 50.0000 | 94.2857 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 25.0000 | 97.0149 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 40.0000 | 92.0635 | 0 | 0 | 2 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 40.0000 | 91.2281 | 0 | 0 | 2 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 99.9295 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.9189 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 13.3333 | 97.2727 | 0 | 0 | 2 | 13 | 2 | 15.3846 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 18.1818 | 98.1450 | 0 | 0 | 2 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6190 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 18.1818 | 98.3409 | 0 | 0 | 2 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7778 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 18.1818 | 98.3942 | 0 | 0 | 2 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8261 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 25.0000 | 94.7712 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 57.1429 | 100.0000 | 40.0000 | 98.9339 | 1 | 0 | 2 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 57.1429 | 100.0000 | 40.0000 | 98.8152 | 1 | 0 | 2 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 33.3333 | 97.2222 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 33.3333 | 97.5207 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.4762 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 33.3333 | 97.6000 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 93.1818 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 36.3636 | 50.0000 | 28.5714 | 97.0954 | 2 | 2 | 2 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.1292 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.4895 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 44.4444 | 66.6667 | 33.3333 | 97.5207 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9810 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6755 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.5455 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6667 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.8304 | 0 | 0 | 2 | 0 | 0 | ||