PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48051-48100 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 95.1807 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9469 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.1754 | 62.5000 | 80.0000 | 99.4253 | 5 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 57.1429 | 80.0000 | 99.3990 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.0695 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | homalt | 66.6667 | 66.6667 | 66.6667 | 50.0000 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | func_cds | * | 44.4444 | 33.3333 | 66.6667 | 50.0000 | 4 | 8 | 4 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 53.3333 | 100.0000 | 36.3636 | 63.3333 | 4 | 0 | 4 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | * | 21.6216 | 15.3846 | 36.3636 | 80.0000 | 4 | 22 | 4 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.2222 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.5254 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7186 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6989 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.5845 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.6636 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | HG002compoundhet | homalt | 6.5934 | 100.0000 | 3.4091 | 71.4286 | 3 | 0 | 3 | 85 | 85 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 75.0000 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 2 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.1831 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.0488 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7528 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.8947 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9058 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.4359 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.8904 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6250 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.8142 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.8919 | 3 | 1 | 3 | 0 | 0 | ||