PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47551-47600 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.5362 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6572 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 98.2301 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9751 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3607 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.5507 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 66.6667 | 66.6667 | 66.6667 | 88.4615 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 50.0000 | 36.3636 | 98.1002 | 4 | 4 | 4 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | * | decoy | het | 42.1053 | 33.3333 | 57.1429 | 99.9727 | 2 | 4 | 4 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.8789 | 11 | 9 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 64.8649 | 75.0000 | 57.1429 | 99.8626 | 9 | 3 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6897 | 64.7059 | 57.1429 | 99.8738 | 11 | 6 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 69.9029 | 90.0000 | 57.1429 | 99.8562 | 9 | 1 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 22.2222 | 88.8889 | 0 | 0 | 4 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 22.2222 | 88.1579 | 0 | 0 | 4 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 93.4426 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5758 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6048 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 11.1111 | 87.1429 | 0 | 0 | 4 | 32 | 2 | 6.2500 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 11.1111 | 87.0504 | 0 | 0 | 4 | 32 | 2 | 6.2500 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 26.6667 | 92.5743 | 0 | 0 | 4 | 11 | 1 | 9.0909 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 28.5714 | 92.5926 | 0 | 0 | 4 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 30.7692 | 97.7113 | 0 | 0 | 4 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 21.0526 | 14.2857 | 40.0000 | 91.8033 | 4 | 24 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 27.5862 | 21.0526 | 40.0000 | 91.3793 | 4 | 15 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | * | 8.2474 | 4.5977 | 40.0000 | 95.3052 | 4 | 83 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |