PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47151-47200 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 40.6780 | 27.2727 | 80.0000 | 86.4865 | 3 | 8 | 4 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.2857 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 98.1221 | 3 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.6048 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 84.6154 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 90.1961 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 87.1795 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.2063 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9392 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.7273 | 100.0000 | 57.1429 | 99.9868 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 72.7273 | 100.0000 | 57.1429 | 99.7676 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.9058 | 5 | 3 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 97.2028 | 4 | 9 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 95.9596 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | map_siren | * | 8.7912 | 4.6512 | 80.0000 | 97.2376 | 4 | 82 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 97.1014 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 97.1831 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 94.9367 | 4 | 2 | 4 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 72.7273 | 66.6667 | 80.0000 | 94.1860 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 97.6744 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 92.9577 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 40.0000 | 90.1961 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 96.5909 | 0 | 0 | 4 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 57.1429 | 96.2963 | 0 | 0 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 40.0000 | 93.4211 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 90.1639 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 97.9339 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 94.6809 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.2456 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.4064 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.4436 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 94.8980 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 94.5205 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.6667 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.0396 | 0 | 0 | 4 | 0 | 0 | ||