PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47001-47050 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5035 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8648 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8723 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5652 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.7047 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.5163 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.6887 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7742 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.5709 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4820 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4910 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.6237 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.9798 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9443 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.9325 | 6 | 3 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.3118 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4225 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.7407 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 98.5542 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 81.4815 | 5 | 7 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 62.5000 | 83.3333 | 72.7273 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.1064 | 74.0741 | 100.0000 | 88.3721 | 20 | 7 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 95.6140 | 5 | 2 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2381 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.1456 | 5 | 3 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | func_cds | hetalt | 69.7674 | 60.0000 | 83.3333 | 72.7273 | 3 | 2 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9726 | 1 | 0 | 5 | 0 | 0 | ||