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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 90 91 92 93 94 95 96 97 98 ... 1720 1721 » 4651-4700 / 86044 show all
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
egarrison-hhga	SNP	*	map_l125_m1_e0	homalt	99.8075	99.6924	99.9229	66.3441	16853	52	16853	13	13	100.0000
anovak-vg	SNP	ti	map_l125_m2_e0	het	77.5170	89.8919	68.1370	78.1191	16968	1908	16853	7881	1719	21.8120
gduggal-bwaplat	SNP	*	map_l100_m2_e0	homalt	75.9766	61.2688	99.9763	72.3553	16863	10660	16851	4	4	100.0000
ltrigg-rtg1	SNP	*	map_l125_m1_e0	homalt	99.7779	99.6510	99.9051	65.6341	16846	59	16847	16	16	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.3680	92.4804	96.3342	31.9134	16886	1373	16845	641	574	89.5476
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3248	99.2165	99.4333	71.0574	16842	133	16845	96	85	88.5417
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3248	99.2165	99.4333	71.0574	16842	133	16845	96	85	88.5417
raldana-dualsentieon	SNP	*	map_l125_m1_e0	homalt	99.7690	99.6273	99.9110	62.5841	16842	63	16842	15	11	73.3333
ckim-isaac	INDEL	I1_5	HG002complexvar	het	94.3344	93.1277	95.5727	50.4026	16939	1250	16838	780	423	54.2308
gduggal-snapfb	SNP	*	map_l125_m2_e1	homalt	97.8213	96.0358	99.6744	76.3853	16837	695	16838	55	21	38.1818
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	70.9040	85.7657	60.4321	53.0525	9526	1581	16837	11024	7799	70.7456
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	84.9953	81.8023	88.4476	37.9806	16848	3748	16836	2199	2149	97.7262
jli-custom	SNP	*	map_l125_m1_e0	homalt	99.7452	99.5741	99.9169	62.6179	16833	72	16833	14	13	92.8571
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
ltrigg-rtg2	SNP	*	map_l125_m1_e0	homalt	99.7511	99.5623	99.9406	63.1402	16831	74	16832	10	9	90.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5563	99.1458	99.9703	67.1493	16830	145	16830	5	5	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5563	99.1458	99.9703	67.1493	16830	145	16830	5	5	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
ndellapenna-hhga	SNP	*	map_l125_m1_e0	homalt	99.7333	99.5504	99.9169	65.2026	16829	76	16829	14	13	92.8571
gduggal-bwavard	SNP	*	map_l125_m2_e1	homalt	98.6568	97.4789	99.8635	68.6528	17090	442	16828	23	18	78.2609
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.6075	95.2464	98.0080	54.6884	16831	840	16827	342	333	97.3684
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.6075	95.2464	98.0080	54.6884	16831	840	16827	342	333	97.3684
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7522	99.8777	99.6270	52.6879	17156	21	16826	63	23	36.5079
cchapple-custom	SNP	*	map_l125_m2_e0	homalt	98.3473	96.7540	99.9941	64.3980	16811	564	16806	1	1	100.0000
gduggal-snapplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1136	83.0190	98.5341	67.6995	16769	3430	16804	250	110	44.0000
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.9291	98.9219	93.1120	72.4097	16792	183	16803	1243	1086	87.3693
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.9291	98.9219	93.1120	72.4097	16792	183	16803	1243	1086	87.3693
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.5520	95.8237	99.3437	50.3216	16933	738	16803	111	74	66.6667
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.5520	95.8237	99.3437	50.3216	16933	738	16803	111	74	66.6667
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7342	99.4993	99.9702	64.1818	16890	85	16793	5	3	60.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7342	99.4993	99.9702	64.1818	16890	85	16793	5	3	60.0000
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
asubramanian-gatk	SNP	*	segdup	het	98.0720	96.9394	99.2313	93.3046	16787	530	16781	130	4	3.0769
rpoplin-dv42	SNP	*	map_l125_m1_e0	homalt	99.4988	99.2251	99.7740	66.6415	16774	131	16774	38	37	97.3684
gduggal-bwaplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.5878	82.9794	99.7323	63.7829	16761	3438	16763	45	38	84.4444
ckim-isaac	SNP	*	segdup	het	98.3305	96.7604	99.9523	88.4697	16756	561	16758	8	1	12.5000
anovak-vg	SNP	ti	map_l150_m1_e0	*	79.4593	85.7346	74.0400	78.6204	16900	2812	16756	5875	1329	22.6213
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.5617	98.6804	88.9479	75.7364	16751	224	16756	2082	698	33.5255
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.5617	98.6804	88.9479	75.7364	16751	224	16756	2082	698	33.5255
ciseli-custom	SNP	ti	map_l100_m2_e1	homalt	91.1369	90.8132	91.4629	61.7425	16795	1699	16756	1564	1245	79.6036
gduggal-bwafb	SNP	*	map_l125_m1_e0	homalt	99.4923	99.1127	99.8748	68.0895	16755	150	16755	21	13	61.9048
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	97.4857	98.0964	96.8826	61.5590	15460	300	16751	539	278	51.5770
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2261	96.1390	98.3380	67.3449	17131	688	16745	283	223	78.7986
astatham-gatk	SNP	*	map_l125_m1_e0	homalt	99.4624	99.0476	99.8807	63.5573	16744	161	16744	20	16	80.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	95.5302	94.7711	96.3016	56.4893	16747	924	16743	643	577	89.7356
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.5302	94.7711	96.3016	56.4893	16747	924	16743	643	577	89.7356
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	69.0612	65.8068	72.6543	37.5809	16149	8391	16741	6301	4632	73.5121

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