PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46901-46950 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.5709 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4910 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.5000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5055 | 5 | 1 | 5 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.8947 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 87.8049 | 5 | 1 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7320 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.8153 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4138 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 76.9231 | 83.3333 | 71.4286 | 97.2763 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 96.3731 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 96.9565 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 96.9697 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 100.0000 | 83.3333 | 85.3659 | 2 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 76.9231 | 62.5000 | 100.0000 | 97.2376 | 5 | 3 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 67.7966 | 57.1429 | 83.3333 | 98.1928 | 4 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.3380 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.4127 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 76.9231 | 100.0000 | 62.5000 | 69.2308 | 5 | 0 | 5 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 41.6667 | 83.3333 | 27.7778 | 84.0708 | 5 | 1 | 5 | 13 | 1 | 7.6923 | |
| anovak-vg | INDEL | I16_PLUS | segdup | het | 34.4828 | 20.8333 | 100.0000 | 91.2281 | 5 | 19 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 12.7389 | 8.0000 | 31.2500 | 63.6364 | 2 | 23 | 5 | 11 | 11 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 41.6667 | 69.2308 | 0 | 2 | 5 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | het | 63.8298 | 75.0000 | 55.5556 | 92.7419 | 3 | 1 | 5 | 4 | 1 | 25.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.2381 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.5000 | 62.5000 | 62.5000 | 94.8718 | 5 | 3 | 5 | 3 | 2 | 66.6667 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 66.6667 | 55.5556 | 83.3333 | 94.7826 | 5 | 4 | 5 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5305 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 66.6667 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 80.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |