PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46451-46500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 5.6818 | 2.9412 | 83.3333 | 90.9091 | 2 | 66 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 8.6207 | 4.5455 | 83.3333 | 89.2857 | 2 | 42 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | * | 14.0845 | 8.6207 | 38.4615 | 94.9807 | 5 | 53 | 5 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | het | 20.0000 | 13.5135 | 38.4615 | 94.7581 | 5 | 32 | 5 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.8889 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 96.0630 | 6 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2830 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 95.4545 | 6 | 2 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | decoy | het | 76.9231 | 100.0000 | 62.5000 | 99.9645 | 6 | 0 | 5 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 1.7730 | 70.9278 | 0 | 0 | 5 | 277 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.6709 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.6667 | 5 | 1 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 71.4286 | 100.0000 | 55.5556 | 99.3767 | 5 | 0 | 5 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.1176 | 75.0000 | 31.2500 | 71.9298 | 6 | 2 | 5 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 33.3333 | 100.0000 | 20.0000 | 92.9178 | 5 | 0 | 5 | 20 | 4 | 20.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | het | 50.0000 | 55.5556 | 45.4545 | 92.5676 | 5 | 4 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 87.8049 | 3 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.5484 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.7500 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 85.7143 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 62.5000 | 71.4286 | 97.8261 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 98.1685 | 5 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 6 | 0 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 98.4756 | 6 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0635 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.0635 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.4815 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 79.3103 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 80.6452 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 80.6452 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3822 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 95.9016 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 97.0414 | 7 | 2 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.5124 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9757 | 5 | 1 | 5 | 0 | 0 | ||