PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46301-46350 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 27.7778 | 16.6667 | 83.3333 | 95.4545 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 27.7778 | 16.6667 | 83.3333 | 96.3190 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 27.7778 | 16.6667 | 83.3333 | 96.3415 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5035 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8648 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8723 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5652 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.4496 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 4 | 0 | 5 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5556 | 100.0000 | 38.4615 | 92.6554 | 6 | 0 | 5 | 8 | 2 | 25.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 81.3953 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 81.3953 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 96.9388 | 5 | 4 | 5 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.7099 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 97.1591 | 6 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.9350 | 5 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 91.2281 | 8 | 1 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 41.6667 | 96.1415 | 0 | 0 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 55.5556 | 96.1207 | 0 | 0 | 5 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.2308 | 93.6893 | 0 | 0 | 5 | 21 | 5 | 23.8095 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8272 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8272 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 98.2968 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 98.3133 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 98.2332 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2281 | 5 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9136 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 97.6247 | 0 | 0 | 5 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9136 | 0 | 0 | 5 | 0 | 0 | ||