PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46051-46100 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.8182 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.2332 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1039 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.5517 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.8852 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9769 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5318 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 16.0000 | 75.0000 | 8.9552 | 46.8254 | 6 | 2 | 6 | 61 | 52 | 85.2459 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 58.8235 | 41.6667 | 100.0000 | 57.1429 | 5 | 7 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 100.0000 | 66.6667 | 99.6005 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.6378 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6835 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m0_e0 | het | 58.3333 | 41.1765 | 100.0000 | 96.3636 | 7 | 10 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.0820 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m0_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 77.7778 | 6 | 8 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 83.7838 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.3659 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.0000 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9801 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.5807 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 95.3846 | 6 | 3 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.6552 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 96.3190 | 6 | 2 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 92.3077 | 85.7143 | 100.0000 | 97.0732 | 6 | 1 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.9459 | 6 | 3 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.5789 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 85.0000 | 6 | 2 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0198 | 3 | 3 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9901 | 1 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 93.2331 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 37.5000 | 90.6977 | 0 | 0 | 6 | 10 | 8 | 80.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 75.0000 | 90.5882 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 60.0000 | 96.1240 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 92.4242 | 0 | 0 | 6 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 60.0000 | 96.1240 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 21.4286 | 90.0000 | 0 | 0 | 6 | 22 | 5 | 22.7273 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 99.7623 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8102 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.5782 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3190 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |