PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45851-45900 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 83.3333 | 5 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 94.6429 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.6684 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.7143 | 94.0171 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 93.8144 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 95.8580 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.1564 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9072 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0413 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4000 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.5816 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.2973 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 97.4684 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 87.7551 | 0 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.7745 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.5612 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0265 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.8723 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2549 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5610 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.8085 | 6 | 3 | 6 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 97.5232 | 6 | 2 | 6 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1538 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.6667 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.7941 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.7143 | 93.8053 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.0000 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 93.5484 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.0339 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 95.7576 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9849 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.1292 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.1613 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.3740 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.5612 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.1074 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 87.7551 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 90.7692 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.8919 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 91.3580 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.2745 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8672 | 4 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 6 | 0 | 6 | 0 | 0 | ||